Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i22
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   2.2  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   5.0  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   6.7  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   8.8  

>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 177 AIMTPLKRQLKYKKILTIFHTSYNSTKI 94
           A+ TPL+  + YKK++ +F + Y  T +
Sbjct: 160 ALSTPLELAVLYKKLVVLFRSLYTYTHL 187


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 315 GGLFECLQHLEAIHNDPFNW 374
           GGL E +Q+ E + N+PF +
Sbjct: 129 GGLVESVQYEEIVFNEPFEY 148


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 154 TFKRSHNGLKNKTPGVRLSNVTMP 225
           TF+RS   LKN T  V LSN+ MP
Sbjct: 211 TFRRSP--LKNDTGSVELSNLYMP 232


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 303 GLCEGGLFECL 335
           G+CEGG F CL
Sbjct: 143 GICEGGFFPCL 153


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 299 ESYLAEIRGQR*GERKPIFAGD*NNGIVTLLNRTPGVLFFRPL*LRLNVSL--NTKKYSL 126
           ES LA +R     +R P+      N    LL+R   +L   P   + NVSL  N+K YS 
Sbjct: 217 ESKLASLRNLNINDRPPLPVL--KNSERNLLHRQ--LLSNHPFFSQNNVSLSTNSKNYST 272

Query: 125 SFTQV 111
            FT++
Sbjct: 273 DFTKI 277


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 339 HLEAIHNDPFNWNLFKSLTFFFLGLKLF----HDMARNAN 446
           H++   +DP  WN   +   F L L++     HD+ R +N
Sbjct: 213 HIDIYVSDPLTWNHTDTNPCFVLALQVISSFGHDLFRQSN 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,281
Number of Sequences: 5004
Number of extensions: 31123
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)