Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i18
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 29 0.40
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.69
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 28 1.2
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 2.8
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 3.7
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 4.9
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 4.9
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 8.5
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +2
Query: 299 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSK--RWSGPGGTV--NRKELIDKQKEL 466
P +R+ +++ +E LS E+TE+YF+ +S+ W+ P V +R+EL + +E
Sbjct: 115 PLQRQVRVEGIIER---LSREETEEYFKTRPRNSRIGAWASPQSEVIADREELEKRVEEY 171
Query: 467 QQR 475
+++
Sbjct: 172 KKK 174
>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 446 IDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVL 595
+D+ E Q + FSA V YHL D QK++L R S +DV +
Sbjct: 894 VDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREES-SDVAV 942
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 155 KF*KKVDSEGSNQKIPPRL-RRNMERVEMLAR-PTARRLRSLWDEKCAILPPERRDKIKS 328
K+ K VD+E N K PP L ++E ++ A P AR L ++ ++ A+L +R +
Sbjct: 9 KYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVL--KRINDTVG 66
Query: 329 ALEEDYFLSP 358
E D L+P
Sbjct: 67 IKESDTGLAP 76
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 374 YFQALSESSKR--WSGPGGTVNRKEL-IDKQKELQQRQKWLVNFSAQVAYH 517
Y L E+ +R W + L +D++KEL R+ WL +FS + H
Sbjct: 362 YIDILMEALRRTEWQESYNVSHDSSLPLDQEKELSLRKSWLSHFSNLLFNH 412
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 428 VNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYI 532
VN+ I K+K L+ R K L++ + V +HL +I
Sbjct: 121 VNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFI 155
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 85 LENKPEPLKSSKPELATDSEQNVKILKKGGF*RK*PENTTTL 210
++NK PL+SS EL+T ++ + L+KG E+ +TL
Sbjct: 1 MKNKDYPLRSSMDELSTKNDNEID-LEKGPLPEYNSEDGSTL 41
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -1
Query: 602 LSPAQRQRCF---STCSILASLFVLLLCN 525
LSP+ R + + + CS LA L+ LL+CN
Sbjct: 551 LSPSNRLQLWLKVAYCSALADLYELLMCN 579
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 55 KQIMPKTGKKLENKPEPLKSSKPELATDSEQNVKILKKGGF*RK*PENTTTLTS*HGAGG 234
K + P + +L+ P+ EL+ E +V K +K ENT+ L H A
Sbjct: 467 KNLEPTSNIQLKKNPDGNLVETSELSDSDENSVLSNKSSTLSKKVVENTSPLKYTHSASK 526
Query: 235 N-VGTANGSSPAL 270
+ +G S AL
Sbjct: 527 SFIGEVQDSLQAL 539
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 527 NHTSGMPPVR*N*PAISVVAEALFVYRSTPCG 432
NHT G R N A+ + +FVY STP G
Sbjct: 33 NHTHGR---RRNTLALCTTKDQMFVYGSTPAG 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,725
Number of Sequences: 5004
Number of extensions: 50232
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -