Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i18
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)                      30   1.7  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      29   3.8  
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)                29   3.8  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_44765| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)                    27   8.8  

>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 806

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 392 ESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHL--CDYIAKGQKE 550
           E++K+WS P GTV+R   + K+ E    +K  V   ++   HL   +Y A G KE
Sbjct: 277 ENTKQWSEPDGTVDRWPFVFKKFE----KKGFVTMFSEDFSHLGAFNYFANGFKE 327


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = +2

Query: 227 RVEMLARPTARRLRSLWD--EKCAILPPERR--DKIKSALEEDYFLSPEQTEQYFQALSE 394
           R++ +A   A+ ++  W   EK      + R  +K K AL++      +QTE+Y   L E
Sbjct: 448 RLKKIASSIAKEVKQFWANVEKVVQYKVQSRLEEKRKKALDDQLNFIVDQTEKYSSWLVE 507

Query: 395 SSKRW--SGPGGTVN 433
           S K    S PG  V+
Sbjct: 508 SLKPQPSSAPGSVVS 522


>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 67  PKTGKKLENKPEPLKSSKPELATDSEQNVKILKKGG 174
           PK  KK +NKPE  K  + +   +S+Q    + +GG
Sbjct: 483 PKKDKKKDNKPEEKKPKEAKKPKESKQEKPKMTEGG 518


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 428  VNRKELIDKQKE-LQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRS 577
            V RK+L+ K KE L ++Q+ +  FS Q++  + + + K       SN  RS
Sbjct: 2260 VLRKQLVQKNKEMLTRKQEGISKFSKQLSAIISEQLQKDANSSPGSNSTRS 2310


>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1607

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 302  PERRDKIKSALEEDYF-LSPEQTEQYFQALSESSKRWSGPGG 424
            P +R K   +  E Y  L+  +   Y  A++   KRW GPGG
Sbjct: 1378 PYKRGKTILSTNETYSSLNFTEGGIYLNAITNIDKRWLGPGG 1419


>SB_44765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 262 ATSRWPCQHFHPLHV 218
           +TS WPC ++HP+ +
Sbjct: 15  STSLWPCDYYHPIRL 29


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
 Frame = +2

Query: 68   LKLERNLKINRSH*KVLNRNWQQIPNRM-*KF*KKVDSEGSNQKIPPRLRRNMERVEMLA 244
            ++LERNL    S  KVL +   ++ NR+  +   K D++  N++   R R+ +  ++   
Sbjct: 1921 VELERNLDAANSRIKVLEKQLARVENRLSTEKASKDDAKEQNEENRERTRKTIGELQAKV 1980

Query: 245  RPTARRLRSLWDEKCAILPPERRDK-IKSALEEDYFLSPEQTEQYFQALSESSKRWS 412
            +  +  L      +  +    R+ K + S+ +E    + ++   Y   LS  SK+++
Sbjct: 1981 KKLSDELVKQKSREERLKVNLRKAKALLSSAKEARDETVQKCNSYSSKLSHVSKKYN 2037


>SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)
          Length = 377

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 519 KW-YATCALKLTSHFCRC*SSFCLSINSLRFTVPPGPDQ 406
           KW Y    LK TS +C   ++F L   +L  T  PGPD+
Sbjct: 36  KWPYENKNLKDTSVYCFEGTAFFLQARNLDSTSSPGPDE 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,539,616
Number of Sequences: 59808
Number of extensions: 387247
Number of successful extensions: 1463
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)