Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i18
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical ...    29   1.9  
U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF038618-12|AAM98017.2|  397|Caenorhabditis elegans P38 map kina...    29   3.4  
AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kina...    29   3.4  
U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    28   4.5  
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z36719-7|CAN86592.1|  217|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z36719-2|CAA85317.2|  421|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab e...    27   7.8  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical
           protein W03D8.1 protein.
          Length = 474

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 46  STKKQIMPKTGKKLENKPEPLKSSKPE 126
           STK+Q++  T K LE   +P K  KPE
Sbjct: 263 STKEQVLTTTRKALETTKKPEKPEKPE 289


>U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical
           protein F26A1.13 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 46  STKKQIMPKTGKKLENKPEPLKSSKPELATDSEQNVKILKKGG 174
           + K +  P   KK+ + P PL+ S P+ +   E+N  + K+ G
Sbjct: 259 AVKLKPKPTWSKKVASSPSPLRLSLPKKSKKEEENHFLKKRSG 301


>AF038618-12|AAM98017.2|  397|Caenorhabditis elegans P38 map kinase
           family protein 2,isoform b protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 155 KF*KKVDSEGSNQKIP---PRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIK 325
           +F  K+ SE +   I    P +R++   +  +A P A  L     E   IL P+RR  + 
Sbjct: 270 EFWSKIQSEEARNYIKNRSPIIRQDFVTLFPMASPYALELL----EMMLILDPDRRISVS 325

Query: 326 SALEEDY 346
           SAL  DY
Sbjct: 326 SALRHDY 332


>AF038618-11|AAM98016.1|  419|Caenorhabditis elegans P38 map kinase
           family protein 2,isoform a protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 155 KF*KKVDSEGSNQKIP---PRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIK 325
           +F  K+ SE +   I    P +R++   +  +A P A  L     E   IL P+RR  + 
Sbjct: 287 EFWSKIQSEEARNYIKNRSPIIRQDFVTLFPMASPYALELL----EMMLILDPDRRISVS 342

Query: 326 SALEEDY 346
           SAL  DY
Sbjct: 343 SALRHDY 349


>U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical
           protein F31A9.4 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 156 FYILFGICCQFRFRTFQWLRFIFKFLSSFRHDLLFCTL 43
           F++L  IC  +RF+   +   I    + F H + FC L
Sbjct: 32  FFVLLKICSLYRFQILDFFPTIQNNKNIFSHGIKFCEL 69


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +2

Query: 68  LKLERNLKINRSH*KVLNR----NWQQIPNRM*KF*KKVDSE--GSNQKIPPRLRRNMER 229
           L +E+ LK   +H  VL++    N QQ    +    K ++ E  G N + PP+L  N+ER
Sbjct: 84  LIVEQRLKFRLAHAAVLHKKLVQNIQQTGLELDGLFKDLEPEPSGLNTRRPPKLELNLER 143

Query: 230 VE 235
           V+
Sbjct: 144 VD 145


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 123 GIGNRFRTECKNFKKRWILKEVTRKYHHAYVVTWSGWKCWHGQRL 257
           G+ N+   +    +KR  L+ + ++  H+++  W  +KCWH + L
Sbjct: 210 GLTNKNLNQKVALEKRTDLEAIAKQ--HSFL--WKNYKCWHNKNL 250


>Z36719-7|CAN86592.1|  217|Caenorhabditis elegans Hypothetical
           protein C06C3.9 protein.
          Length = 217

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 189 TRKYHHAYV--VTWSGWKCWH 245
           TR + H+ V  + + GW+CWH
Sbjct: 122 TRDFSHSIVADLVYRGWQCWH 142


>Z36719-2|CAA85317.2|  421|Caenorhabditis elegans Hypothetical
           protein C06C3.4 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 189 TRKYHHAYV--VTWSGWKCWH 245
           TR + H+ V  + + GW+CWH
Sbjct: 131 TRDFSHSIVADLVYRGWQCWH 151


>U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab
           effector) protein 5 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 498 LKLTSHFCRC*SSFCLSINSLRFTVPPGPDQR 403
           +K+  H   C   FC+  N L+ TVP GP+ R
Sbjct: 360 VKVKPHCLHCGRIFCM--NCLKDTVPSGPNHR 389


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 284 FRPIKSAGDEPLAVPTFPPAP 222
           F+P+ + GD PL  PT  P+P
Sbjct: 861 FQPLFNTGDAPLLYPTAAPSP 881


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,811
Number of Sequences: 27780
Number of extensions: 295075
Number of successful extensions: 1056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)