Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i18
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    25   0.76 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 513 YATCALKLTSHFCRC*SSFCLSINSLRFTVPP 418
           Y TC +KL   F      F + +  L  T+PP
Sbjct: 68  YTTCIMKLLRTFKNGNFDFDMIVKQLEITMPP 99


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 464 ALFVYRSTPCGSPFHLVPTNVSKIHS 387
           + ++Y S      FHL+PT    +HS
Sbjct: 172 SFYIYPSLQGDGKFHLLPTGELLVHS 197


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 464 ALFVYRSTPCGSPFHLVPTNVSKIHS 387
           + ++Y S      FHL+PT    +HS
Sbjct: 172 SFYIYPSLQGDGKFHLLPTGELLVHS 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,328
Number of Sequences: 438
Number of extensions: 3566
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)