Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i18
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ...    30   1.0  
At5g22310.1 68418.m02603 expressed protein                             29   2.4  
At5g44180.1 68418.m05406 homeobox transcription factor, putative...    29   3.1  
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea...    28   4.1  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    28   4.1  
At2g36420.1 68415.m04471 expressed protein                             28   5.5  
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu...    27   7.2  
At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein con...    27   9.6  
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,...    27   9.6  

>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
           programmed cell death 2 C-terminal domain-containing
           protein similar to SP|Q16342 Programmed cell death
           protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
           contains Pfam profiles PF01753: MYND finger, PF04194:
           Programmed cell death protein 2, C-terminal putative
           domain
          Length = 418

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 201 HHAYVVTWSGWKCWHGQRLVACALYGTKNAQFCLPKEE 314
           H A + TW G   W G +L  C+  G KNA++C PK +
Sbjct: 183 HGAPLCTWCG--TWKGDKL--CS--GCKNARYCSPKHQ 214


>At5g22310.1 68418.m02603 expressed protein
          Length = 481

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 35/119 (29%), Positives = 50/119 (42%)
 Frame = +2

Query: 242 ARPTARRLRSLWDEKCAILPPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWSGPG 421
           AR + + L S  DE+      E+R  I+S  EE         E+  +  +E   R  G  
Sbjct: 224 ARSSLKHLMSELDEE----EEEKRRLIESLQEE------AMVERKLRRRTEKMNRRLGRE 273

Query: 422 GTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVLE 598
            T   KE   K KE  +R+K   +   +V   L   I   +KEM     +  IADV+ E
Sbjct: 274 LT-EAKETERKMKEEMKREKRAKDVLEEVCDELTKGIGDDKKEMEKEREMMHIADVLRE 331


>At5g44180.1 68418.m05406 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7/homeotic
           protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
           similar to GP|4165087| Williams-Beuren syndrome deletion
           transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
           domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
 Frame = +2

Query: 206 RLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALEEDYFLSPEQTEQYF-Q 382
           R+RR +E+ +ML R    ++R   + +      ERR + +  L E       + E+Y  +
Sbjct: 345 RIRRELEKQDMLRRKREEQIRKEMERQ----DRERRKEEERLLRE----KQREEERYLKE 396

Query: 383 ALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVS 562
            + E  +R         R E + +QKE  +++K +    A     +   IAK   E++  
Sbjct: 397 QMRELQRREKFLKKETIRAEKM-RQKEEMRKEKEVARLKAANERAIARKIAKESMELIED 455

Query: 563 NRL 571
            RL
Sbjct: 456 ERL 458


>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats
          Length = 910

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 173 DSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEK 286
           +++G N++   + + +M+  + L  P ++ L+S WD K
Sbjct: 751 EADGENEENNKKDQNSMKNFDALESPFSKHLKSSWDSK 788


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
 Frame = +2

Query: 305 ERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWSGPGGTVNRKE--LIDKQKELQQRQ 478
           E R+     L +DY  + E  E+Y   + E+ +R    G  V  +E  ++D ++ ++  +
Sbjct: 289 EEREATIKKLTDDYKQAREMLEEYMSKMEETERRMQETGKDVASRESAIVDLEETVESLR 348

Query: 479 KWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVL 595
             +     ++   L + ++  + ++ +SN+   + + VL
Sbjct: 349 NEVERKGDEIE-SLMEKMSNIEVKLRLSNQKLRVTEQVL 386


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 24/105 (22%), Positives = 44/105 (41%)
 Frame = +2

Query: 191 QKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALEEDYFLSPEQTE 370
           Q+   RL + + R E LA      L     E+      E  ++ + + E+D     +  E
Sbjct: 287 QRAKRRLLKKLRRFEKLAGLDPVELEGKMSEE----EDEEEEEYEESEEDDNIRIYDSDE 342

Query: 371 QYFQALSESSKRWSGPGGTVNRKELIDKQKELQQRQKWLVNFSAQ 505
           +Y + + E+  R S       RK+  ++QK+ +    W V   A+
Sbjct: 343 EY-EDVDEAMARESRCAEDEKRKKNDERQKKWRMMNAWRVGLGAE 386


>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
           putative strong similarity to cytosine-5
           methyltransferase (METII) [Arabidopsis thaliana]
           GI:6523846; contains Pfam profiles PF01426: BAH domain,
           PF00145: C-5 cytosine-specific DNA methylase
          Length = 1512

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +2

Query: 164 KKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALEED 343
           KK+  +G N      L   + R++ +   T R +  +W E  +I  PE   +    +EE+
Sbjct: 582 KKILQKGKNLNPRAGLAHVVTRMKPMQATTTRLVNRIWGEFYSIYSPEVPSEAIHEVEEE 641

Query: 344 YFLSPEQTEQ 373
                E+ ++
Sbjct: 642 EIEEDEEEDE 651


>At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 534

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 422 GTVNRKELIDKQKELQQRQKWLVNFSAQVAYHLCD 526
           GTV R+E+++  K ++  QK L      +    CD
Sbjct: 426 GTVTREEILEDTKRIEYHQKHLQELQKAITEDGCD 460


>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 513

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 197 IPPRLRRNMERVEMLARPTARRLRSLWDEK 286
           +P  LR  +E  +   R +ARRL ++W+E+
Sbjct: 86  LPDALRDMIENGDDFGRKSARRLVNIWEER 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,061,592
Number of Sequences: 28952
Number of extensions: 270633
Number of successful extensions: 902
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)