Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i15
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17) 31 0.67
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9) 31 0.89
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61) 29 2.7
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 2.7
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 29 2.7
SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_9721| Best HMM Match : Filament (HMM E-Value=0.2) 29 4.8
SB_7582| Best HMM Match : 5-nucleotidase (HMM E-Value=0) 29 4.8
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49) 28 8.3
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 28 8.3
SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71) 28 8.3
SB_44253| Best HMM Match : rve (HMM E-Value=8.4e-10) 28 8.3
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9) 28 8.3
>SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17)
Length = 786
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +2
Query: 443 VQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQI 619
V++ V+ +T D ++ V++N D ++E+VRD FC + E R + V V ++
Sbjct: 189 VEQAMHCVMELTKDTVI--VLDNAEDMLVEEVRDPFC-NYVETIAVRAMHVRLLVTSRL 244
>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
Length = 433
Score = 31.1 bits (67), Expect = 0.89
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 107 KPLHLATNKTKGKSWYQNMSKDSCRTTATT--SPLRCNLYR--KNKESTRTSKCK*TYSM 274
K L+ K G S +N+S S T+TT S ++++ KN STRT C S
Sbjct: 27 KNQELSKGKANGSSKPKNVSSKSANETSTTPNSSSSRSIFQMLKNPPSTRTVNCPICSSR 86
Query: 275 CRATGENDHREMRC 316
+ N H + C
Sbjct: 87 VQMASINTHLDSGC 100
>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
Length = 375
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/88 (27%), Positives = 33/88 (37%)
Frame = +2
Query: 74 QCRTST*ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 253
+CR S+ T K L ++ K K W KD+ R + E TR K
Sbjct: 133 ECRNSSNGTCEKMLQC--HQEKSKCW--KTIKDNKREAFAGDD-----EDQRPEPTRPCK 183
Query: 254 CK*TYSMCRATGENDHREMRCYFGCSCC 337
CK + C T E ++ CY C
Sbjct: 184 CKTQFEECLKTAEGCENQLTCYKNKMTC 211
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 527 IEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNELETLIKQLKDDI 691
+E R++ +++ A + +E+ E+Q ++ + F HLNE E I+ LK +I
Sbjct: 619 MEVFREESQKDYEMTALRLSSQIEAMEEEQRKNKRYFKNHLNEKEKEIEVLKVEI 673
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +2
Query: 311 RCYFGCSCCTP*STLAWLCAQPFTSTSTKIRPLRRTAEETENRRVQKTKATVLRVTMDRI 490
RC G S TP T + AQP P+R+ ++ E + A+ V MDR+
Sbjct: 94 RCTTGASSSTPMPTYCYYRAQPKMFDEIP-NPVRQVLDQIEGLMNKSRSASASVVYMDRV 152
Query: 491 LKTVINNKIDSMIE 532
+ + +D ++
Sbjct: 153 IWRHFHGVLDEDVD 166
>SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 221 DTNCNAGGWW-WRLFYRNPWTYFDTSFFLLFY 129
DT+ +A WW WR + W YF+ L Y
Sbjct: 132 DTHASAARWWRWRECPKGDWQYFEHCLPALTY 163
>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 216
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +2
Query: 422 EETENRRVQKTKA-TVLRVTMDRILKTVINNKIDSMIEKVRDKF--CQEFGECANT-RTL 589
+E+E R + + L VTM + ++D ++ + Q + NT +
Sbjct: 3 DESEPERADEVASRATLMVTMLSEENAKLRKQLDDTKRELAQQLNQIQALKQSQNTHKEP 62
Query: 590 SVESTVEQQIESSKNFDKHLNELETLIKQLK 682
S + QQ++ S+ F + E+ L KQLK
Sbjct: 63 SQSESTTQQLDQSEKFGNQVEEIHNLTKQLK 93
>SB_7582| Best HMM Match : 5-nucleotidase (HMM E-Value=0)
Length = 441
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +2
Query: 491 LKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNELETLI 670
LK IN K D ++ R K C+++ + L+ T+ E + F LN+++ +
Sbjct: 256 LKDDINRKYDGTLDACR-KSCRQYQTVFIQKVLNAVETINWPEEKKERFANVLNDVQNIS 314
Query: 671 KQLKDD 688
+ ++
Sbjct: 315 SEKSEE 320
>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 191 WRLFYRNPWTYFDTSFFLLF 132
WR ++R+PW+ TS+ ++F
Sbjct: 52 WRYYFRHPWSRIITSYLVVF 71
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 506 NNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNE-LETLIKQLK 682
N+ + +++ +RDK C N L +++ + + K F K L + L+ L +QL+
Sbjct: 2864 NSDVSTILPSLRDKICNGIPIRLNVGILIIDAAQKVDTDKEKEFIKELAQTLDELPRQLR 2923
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 542 DKFCQEFGECANTRTLSVESTVEQQ---IESSKNFDKHLNELE 661
DK +E G+CA + +E+ VEQ ES KN D+ ++ +E
Sbjct: 4040 DKDWRELGDCAAKQVQGLEAAVEQMGKLQESLKNTDEAISTVE 4082
>SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 527 IEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKN 634
+EK KFC F EC + + E+ + +S+N
Sbjct: 147 LEKHNQKFCGYFDECLTNSSKKLTGYTERSVANSRN 182
>SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49)
Length = 351
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 533 KVRDKFCQEFGECANTRTLSVESTVEQQIESSK--NFDKHLNELETLIKQLKD 685
++RDK+ E + T +S E Q + + N K LNE E +K+L++
Sbjct: 52 EIRDKYALTSKEISGLNTQLQDSEYELQKANHRVENLVKRLNEQEAFVKKLRE 104
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 479 MDRILKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQI 619
MD +++ + + I ++ K FC++FG AN +T + + ++ I
Sbjct: 41 MDEVMEKLADLDIPTLSRKDLQSFCKQFGLKANGKTSELINRLQSHI 87
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Frame = +2
Query: 386 TSTKIRPLRRTAEETENRRVQKT---KATVLRVTMDRILKTVINNKI-------DSMIEK 535
T++K+R EET ++ +K+ + TV +V +K +K+ + + K
Sbjct: 226 TASKVREKSCIKEETASKVREKSCIKEETVSKVREKSCIKQETASKVREKSCIKEETVSK 285
Query: 536 VRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNELETLIK 673
VR+K C + + R + +S ++Q+ S + K + T K
Sbjct: 286 VREKSCIKQETASKVREVREKSCIKQETASKRASTKRIPNRRTANK 331
>SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71)
Length = 238
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 533 KVRDKFCQEFGECANTRTLSVESTVEQQIESSK--NFDKHLNELETLIKQLKD 685
++RDK+ E + T +S E Q + + N K LNE E +K+L++
Sbjct: 3 EIRDKYALTSKEISGLNTQLQDSEYELQKANHRVENLVKRLNEQEAFVKKLRE 55
>SB_44253| Best HMM Match : rve (HMM E-Value=8.4e-10)
Length = 589
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +2
Query: 365 CAQPFTSTSTKIRPLRRTAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRD 544
CA+ + +T + L T+E V K+ T + + +R N K +
Sbjct: 55 CARTYEATQAHVAQLHNTSEAAGICIVGKS-GTQNQYSGNRNYPANQNRKCGNRGGDHGP 113
Query: 545 KFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLN-ELETL 667
+ CQ FG C+N + +S +++ ++ D +++ E ETL
Sbjct: 114 RKCQAFGTCSNRKRQQSQS--NRRVNEIQDNDNYMSEEFETL 153
>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/84 (25%), Positives = 35/84 (41%)
Frame = +2
Query: 416 TAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSV 595
TA+E RRV + + R D I + ++DS E+V K E +L +
Sbjct: 263 TAKERLKRRVMQDNSGEKRFKQDNINNVNMEEELDSKPERVATK--DSTNENEKDASLKI 320
Query: 596 ESTVEQQIESSKNFDKHLNELETL 667
E + Q S D+ ++ E +
Sbjct: 321 EGVLVQDEHESVADDEEIDVCEEI 344
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +2
Query: 464 VLRVTMDRILKTVINNKID-SMIEKVRDKF------CQEFGECANTRTLSVESTVEQQIE 622
+L+ ++LK + + K D + +++ K E + A + +E +E IE
Sbjct: 589 LLKADQSKLLKEIADLKNDKNQLKQANQKLGHDRERAVEDAKDAFAKIKDLEKQLEDAIE 648
Query: 623 SSKNFDKHLNELETLIKQLKDDI 691
K+ ++ +ELE +++LKD++
Sbjct: 649 KRKHAEQESDELEADLQKLKDEL 671
>SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)
Length = 398
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 398 IRPLRR-TAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECA 574
++ +RR +++ + +++ + +++ +RIL NNK D + +V++ + FG+
Sbjct: 118 LQEIRRFPSKKKQKELLEQERQNRIKMYRERILT---NNKSDETLVQVQEDLLKLFGKIK 174
Query: 575 NTRTLSVESTVEQQIESSKNFDKHLNELETLIKQL 679
+ L E+T +Q + + L +TL KQ+
Sbjct: 175 KDKKLLKETTHNEQEDRKALMHEELLH-KTLSKQV 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,883,302
Number of Sequences: 59808
Number of extensions: 411842
Number of successful extensions: 1525
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -