Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i15
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37230.1 68415.m04568 pentatricopeptide (PPR) repeat-containi...    30   1.7  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    29   2.2  
At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase carboxyl...    29   2.9  
At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase carboxyl...    29   2.9  
At4g28880.1 68417.m04127 casein kinase, putative similar to simi...    29   3.9  
At4g28860.1 68417.m04124 casein kinase, putative similar to case...    29   3.9  
At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At2g33480.1 68415.m04104 no apical meristem (NAM) family protein...    28   5.1  
At2g17110.1 68415.m01974 expressed protein                             28   5.1  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   6.8  
At5g03435.1 68418.m00297 C2 domain-containing protein contains P...    27   9.0  
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,...    27   9.0  

>At2g37230.1 68415.m04568 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 757

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 386 TSTKIRPLRRTAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMI 529
           TST+ RPLR   +  + +  +K + T+ R+  +R   T + N I  ++
Sbjct: 65  TSTETRPLRERFQRGKRQNHEKLEDTICRMMDNRAWTTRLQNSIRDLV 112


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 545  KFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNELETLIKQLKDDI 691
            K  +E  E A  RT + ++ VEQ ++  +  +K +  L+  + QLKD++
Sbjct: 1487 KQLEEAKEEAGKRT-TTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEV 1534


>At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 552

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = -2

Query: 615 CCSTVDSTLNVLVL----AHSPNS*QNLSLTFSIIESILLLI--TVFSILSMVTLSTVAF 454
           CC   D  +N+  L     H PN    ++LT  +I+  LLL+  +V +    + L + ++
Sbjct: 184 CCGFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSY 243

Query: 453 VFCTL 439
           V C L
Sbjct: 244 VGCAL 248


>At2g38040.2 68415.m04670 acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit family contains Pfam
           profile: PF03255: Acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit
          Length = 769

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
 Frame = +2

Query: 389 STKIRPLRRTAEETENRRVQ----KTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQ 556
           S KI   +R A  +++R++Q    K K  +L+           +  ++ MIEK++ +   
Sbjct: 417 SRKINMKKREAVFSDSRKLQGEVDKLKEQILKAKETSTEAEPSSEVLNEMIEKLKSEIDD 476

Query: 557 EFGECANTRTLSVESTVEQQIESSKNFDKHLNE--LETLIKQLKDD 688
           E+ E A    L    T  ++  S  + ++HL    L   I++LK++
Sbjct: 477 EYTEAAIAVGLEERLTAMREEFSKASSEEHLMHPVLIEKIEKLKEE 522


>At2g38040.1 68415.m04669 acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit family contains Pfam
           profile: PF03255: Acetyl co-enzyme A carboxylase
           carboxyltransferase alpha subunit
          Length = 769

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
 Frame = +2

Query: 389 STKIRPLRRTAEETENRRVQ----KTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQ 556
           S KI   +R A  +++R++Q    K K  +L+           +  ++ MIEK++ +   
Sbjct: 417 SRKINMKKREAVFSDSRKLQGEVDKLKEQILKAKETSTEAEPSSEVLNEMIEKLKSEIDD 476

Query: 557 EFGECANTRTLSVESTVEQQIESSKNFDKHLNE--LETLIKQLKDD 688
           E+ E A    L    T  ++  S  + ++HL    L   I++LK++
Sbjct: 477 EYTEAAIAVGLEERLTAMREEFSKASSEEHLMHPVLIEKIEKLKEE 522


>At4g28880.1 68417.m04127 casein kinase, putative similar to similar
           to casein kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 415

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 456 FVFCTLRFSVSSAVLRKGRILVEVEV---KGWAHNQARVDQGVQQLHPK*HRISLWSFSP 286
           FV+C  +FS  + ++   ++L  +E    KG+ H   + D  +  L  K +++ L  F  
Sbjct: 93  FVYCGRKFSPKTVLMLADQMLTRIEFVHSKGYLHRDIKPDNFLMGLGRKANQVYLIDFGL 152

Query: 285 VARH 274
             R+
Sbjct: 153 AKRY 156


>At4g28860.1 68417.m04124 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 414

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 456 FVFCTLRFSVSSAVLRKGRILVEVEV---KGWAHNQARVDQGVQQLHPK*HRISLWSFSP 286
           FV+C  +FS  + ++   ++L  +E    KG+ H   + D  +  L  K +++ L  F  
Sbjct: 93  FVYCGRKFSPKTVLMLADQMLTRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYLIDFGL 152

Query: 285 VARH 274
             R+
Sbjct: 153 AKRY 156


>At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 152 YQNMSKDSCRTTATTSPLRCNLYRKNKES 238
           +Q M +D C+ T  T  L  NLY K  +S
Sbjct: 252 FQRMKRDRCKPTTETYNLMINLYGKASKS 280


>At2g33480.1 68415.m04104 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 268

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +2

Query: 221 RKNKESTRTSKCK*TYSMCRATGENDHREMRCY------FGCSCCTP*STLAWLCAQPFT 382
           R+ +E  + S C   Y   R   +   R  RC         C CC+  ++ + +C+   T
Sbjct: 187 REREEENKKSTCPIFYDFMRKDTKKKRRRRRCCDLNLTPATCCCCSSSTSSSSVCSSALT 246

Query: 383 STST 394
            TS+
Sbjct: 247 HTSS 250


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 395 KIRPLRRTAEE-TENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDK 547
           K+R L+R  E   EN++V  T+  V  ++    +   + +KI   I K+RD+
Sbjct: 432 KLRKLKRMDERGAENQKVDSTRKLVRSLSTKIRIAIQVVDKISVTINKIRDE 483


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 83  TST*ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 253
           TST  T +     + N  +  SW    S  S  T+ T     CN+++    ST   K
Sbjct: 65  TSTITTRSVSRTTSENTFRSDSWSSRSSDSSSPTSYTPRTSTCNIFKITSSSTGHGK 121


>At5g03435.1 68418.m00297 C2 domain-containing protein contains Pfam
           profile PF00168: C2 domain
          Length = 745

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 TSTKIRPLRRTAEETENRRVQKTKATVLRVTM-DRILKTVIN 508
           +STK  P+    +  +     KTK  VL VT+ DR+  TVIN
Sbjct: 73  SSTKDLPVGPNMDWNQVFAFDKTKGDVLSVTLKDRLTNTVIN 114


>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
           transcription complex, subunit 8 (CAF1-like protein,
           CALIFp) [Homo sapiens]
          Length = 360

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 213 LQRRGLVVAVVLQESLDIF*YQLFPFVLFVARCKGLVE 100
           L+R GL +  +  E +D+F Y  FP ++ V R +  VE
Sbjct: 109 LRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVE 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,009
Number of Sequences: 28952
Number of extensions: 286497
Number of successful extensions: 1038
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)