Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i14
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   1.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   3.7  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   4.9  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.4  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   8.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 257 LRNESTSSDGTF-SRIIFPLLQSYLMIVKSLSSAVQAPTNWLYTSAQI 117
           L + STS+   F   +IF L  +Y  +   LS+   +  NW+Y+  Q+
Sbjct: 503 LLDHSTSTISLFFGLLIFTLKSAYGYLTHRLSALYTSSENWVYSEQQL 550


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 73   EKEFKNILRTHSEALICAEVYSQFV--GACTALDRLFTIIKYDWSNGKIILLKVPSDEVD 246
            E +  NIL  H+EA +  +  S F+  G   +   + +I K         L      E++
Sbjct: 1206 ESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFTEIEIN 1265

Query: 247  SLRRFRDQSEPVYLFIFVSSFFINEKN 327
            ++ R++ + + + L  FV S   N KN
Sbjct: 1266 TVDRYQGRDKDIILISFVRS---NSKN 1289


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 476 STDFCHVVYIFAIYILI 526
           STDF H V +FA+Y LI
Sbjct: 828 STDFLHKVNVFAVYWLI 844


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 181 IIKYDWSNGKIILLKVPSDE-VDSLRRF 261
           I+K+D+ NGK I+ +   D+ +++LR F
Sbjct: 347 IVKFDFGNGKSIVHEFSKDDNIETLRAF 374


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 145 VGACTALDRLFTIIKYDWSNGKIILLKV 228
           +GAC A+  LF I  Y W N     L+V
Sbjct: 368 IGACCAMSFLFYITFYCWDNYYYSFLQV 395


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 414 YETFVSSVLI*MELYLYCILTVPIFVMLCTYLQSIY*YGKQKLCVPFYESC 566
           YET++ +V + +     CI    +F+  C  + SI      KL   F   C
Sbjct: 158 YETWIKAVKVTVIFLAQCIKVTVVFLAQCVKVTSISLAKCVKLTAVFLAQC 208


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +1

Query: 511 NLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFF 639
           N+ ++T SKN+ + FTK+ Q++   + +  + +R E   ++ F
Sbjct: 260 NVSLSTNSKNYSTDFTKI-QSDSSLLQNRQQNHRIETDQLSHF 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,260
Number of Sequences: 5004
Number of extensions: 65308
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)