Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i14
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)                  28   6.9  

>SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -1

Query: 654 YAL-FRKKINIVHFFSIFSISVENFILLRLRNFRKKGHKV---FASR 526
           YAL  R ++ +V F+  +++  +N ++ RLR++ K  H V   FAS+
Sbjct: 36  YALKLRFRVILVLFYMCYTVYRQNILVNRLRDYAKSPHSVNRKFASK 82


>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 654 YALFRKKINI---VHFFSIFSISVENFILLRLRNF 559
           Y   R ++NI     FF +F I   NFI++++RN+
Sbjct: 340 YPEVRSELNIHCETSFFCVFRIEFVNFIVIKVRNY 374


>SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)
          Length = 554

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 510 QSIY*YGKQKLCVPFYE 560
           Q IY Y  Q++CVPFY+
Sbjct: 333 QEIYQYESQEICVPFYQ 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,737,865
Number of Sequences: 59808
Number of extensions: 434317
Number of successful extensions: 925
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)