Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i14
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 38 0.010
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 38 0.010
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 36 0.040
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 36 0.040
Z92796-2|CAB07231.1| 347|Caenorhabditis elegans Hypothetical pr... 35 0.069
Z69634-2|CAA93451.2| 926|Caenorhabditis elegans Hypothetical pr... 28 6.0
U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical pr... 28 7.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 7.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.9
AC006695-7|AAM48553.1| 724|Caenorhabditis elegans Titin family ... 28 7.9
AC006695-6|AAU45229.1| 703|Caenorhabditis elegans Titin family ... 28 7.9
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 28 7.9
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 28 7.9
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 28 7.9
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 28 7.9
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 28 7.9
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 58 IEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSD 237
+E+ + +F+ ++R H E +I + Y+ + G C A+ L+ + ++ II KV D
Sbjct: 9 LELADMSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVD 66
Query: 238 EVDSL-RRFRDQSEPVYLF 291
E + L ++ + P ++F
Sbjct: 67 EAEDLCSKYDVKMMPTFIF 85
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 58 IEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSD 237
+E+ + +F+ ++R H E +I + Y+ + G C A+ L+ + ++ II KV D
Sbjct: 9 LELADMSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVD 66
Query: 238 EVDSL-RRFRDQSEPVYLF 291
E + L ++ + P ++F
Sbjct: 67 EAEDLCSKYDVKMMPTFIF 85
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 73 EKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSDEVDSL 252
+ +F+ ++R H E +I + Y+ + G C A+ L+ + ++ II KV DE + L
Sbjct: 15 QSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVDEAEDL 72
Query: 253 -RRFRDQSEPVYLF 291
++ + P ++F
Sbjct: 73 CSKYDVKMMPTFIF 86
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 35.5 bits (78), Expect = 0.040
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 73 EKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSDEVDSL 252
+ +F+ ++R H E +I + Y+ + G C A+ L+ + ++ II KV DE + L
Sbjct: 15 QSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVDEAEDL 72
Query: 253 -RRFRDQSEPVYLF 291
++ + P ++F
Sbjct: 73 CSKYDVKMMPTFIF 86
>Z92796-2|CAB07231.1| 347|Caenorhabditis elegans Hypothetical
protein H25K10.3 protein.
Length = 347
Score = 34.7 bits (76), Expect = 0.069
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 447 MELYLYCILTVPIFVMLCTYLQSIY*YGKQKLCVPFYESC 566
++ ++C T+P ++ + +L +GKQ+LC PF++ C
Sbjct: 30 IQFSIFCF-TLPFYIFVIYFLVDAQLHGKQELCTPFFKLC 68
>Z69634-2|CAA93451.2| 926|Caenorhabditis elegans Hypothetical
protein B0001.2 protein.
Length = 926
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 28 KMAKRKIDLFIEIK---NEKEFKNILRTHSEALICAEVYSQFVGACTAL 165
KM + ID +I+ ++++ N+ RT + +YSQFV C L
Sbjct: 851 KMENQDIDEVFKIEKNDSDRQVNNLFRTKLTCMPSETIYSQFVQVCKIL 899
>U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical
protein F07F6.2 protein.
Length = 261
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 223 KVPS-DEVD-SLRRFRDQSEPVYLFIFVSSFFINEKNKTLNNKGGIGLLSFSDLKFE*VF 396
++PS +EVD +F++++ + + + + E N+ + NK L D++FE
Sbjct: 156 RIPSKEEVDRQTLKFKEEARRIKRLMIEEDWHVKEANEDVKNKIEQEGLKRKDMEFEEQL 215
Query: 397 FHL 405
+HL
Sbjct: 216 YHL 218
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AC006695-7|AAM48553.1| 724|Caenorhabditis elegans Titin family
protein 1, isoform a protein.
Length = 724
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AC006695-6|AAU45229.1| 703|Caenorhabditis elegans Titin family
protein 1, isoform b protein.
Length = 703
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 481 RFLSCCVHICNLYINTGSKNFVSLFTKVAQTEEDEIFHTYREYREEVHNVNFFS 642
RFL+ + NL++ GS + + F +EYR+ +H V FS
Sbjct: 206 RFLT---QVPNLFVTAGSNVIIDVEVDANPPARFSWFVNGKEYRDSIHGVEMFS 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,999,096
Number of Sequences: 27780
Number of extensions: 365992
Number of successful extensions: 958
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -