Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i13
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 34 0.10
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 31 0.95
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047... 31 0.95
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 30 1.7
02_05_0686 - 30900748-30902167,30903442-30904742 29 3.8
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 5.1
12_01_0353 - 2695457-2696028,2696147-2696264 28 6.7
09_04_0261 + 16207565-16207825,16207935-16208087,16208191-162083... 28 6.7
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 28 6.7
12_01_0741 + 6649988-6653065 27 8.9
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 27 8.9
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 27 8.9
02_05_0519 - 29708600-29709079 27 8.9
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 200 PKPGSGKVIVPPADCKPGPICYNPCVPRFHHG 295
P P G V+ PP GP Y P P FH G
Sbjct: 54 PAPHHGVVVPPPMTSGGGPYSYPPATPPFHRG 85
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 188 CGCPPKPGSGKVIVPPADCKPGPICY 265
CGC +P +V PP C P P CY
Sbjct: 232 CGCGIRPWPPQVWPPPPVCPPPPWCY 257
>03_06_0120 +
31804301-31804412,31804525-31804631,31804714-31804756,
31806069-31806187
Length = 126
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 311 KYRNFTYFVLLPLIAIQSFN-ALGHEPPPKGPCRDYEYMRVRTKRFPWGDGV 463
K+ TY ++ + ++N + GH + P Y Y+ +R K FPW + V
Sbjct: 42 KWEKITYAGIVTCTLLAAYNLSKGHPHFDEPPA--YPYLHIRNKEFPWENAV 91
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 305 WKKYRNFTYFVLLPLIAIQSFNALGHEPPPK 397
W KY +FTY+ LIA+Q L PP+
Sbjct: 547 WAKYTSFTYYCYRLLIAVQYSGRLARLLPPE 577
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
PP P K PP P G PPA P P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVP-PADCKPGP 256
PP PS P PG G P P+D P P
Sbjct: 261 PPSPSSGSSPTTPGGGGGYTPTPSDTPPSP 290
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVP-PADCKPGP 256
PP PS P PG G P P+D P P
Sbjct: 183 PPSPSSDTSPTTPGGGGGYTPTPSDAPPSP 212
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVP-PADCKPGP 256
PP PS P PG G P P+D P P
Sbjct: 209 PPSPSSDTSPTTPGGGGGYTPTPSDAPPSP 238
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVP-PADCKPGP 256
PP PS P PG G P P+D P P
Sbjct: 235 PPSPSSDTSPTTPGGGGGYTPTPSDTPPSP 264
>12_01_0353 - 2695457-2696028,2696147-2696264
Length = 229
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 329 YFVLLPLIAIQSFNALGHEPPP-KGPCRDYEYMRVRTKRFPWGD 457
+F+L+PLIA+ + A+ +P P + C + VR FP D
Sbjct: 6 FFLLIPLIALVTTQAMASDPSPLQDLCVADKNSPVRVNGFPCKD 49
>09_04_0261 +
16207565-16207825,16207935-16208087,16208191-16208316,
16208595-16208847,16209303-16209485,16209486-16209582,
16209706-16209769,16209904-16210053,16210215-16210387,
16210497-16210536,16211170-16211223
Length = 517
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 173 PRPSKCGCPPKPGSGKVIVPPADCKPGPICYNP 271
PRP+ C P PGS + V P PG + P
Sbjct: 14 PRPACCRPPSSPGSRRGFVFPPRFAPGVFLFFP 46
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 170 PPRPSKCG-CPPKPGSGKVIVPPADCKPG 253
P RP + G PP+P +V + PADC G
Sbjct: 17 PKRPRRDGDAPPEPQPARVGLNPADCDLG 45
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 161 LCGPPRPSKCGCPPKP 208
LCGPP +CG P +P
Sbjct: 953 LCGPPLSKQCGYPTEP 968
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 161 LCGPPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
L PP P PKPG G + P P P
Sbjct: 97 LRAPPPPQVFHAQPKPGEGAMAAPQPQQPPAP 128
>05_05_0334 +
24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 452 GDGVKSFYHNEHVN 493
GDG SF++NEHVN
Sbjct: 325 GDGFLSFFNNEHVN 338
>02_05_0519 - 29708600-29709079
Length = 159
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 176 RPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVPRFHHGKDTWKKYR 319
R + G PP+P + +VP A P P N VP W++YR
Sbjct: 68 RRGRVGLPPRPPTSAPVVPQAR-MPTPTVQNSFVP-LPPNLAFWEEYR 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,905,855
Number of Sequences: 37544
Number of extensions: 398420
Number of successful extensions: 1332
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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