Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i13
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily ass... 46 2e-05
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 39 0.002
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.65
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 0.65
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 0.65
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 0.65
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.86
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.86
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.86
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 30 1.5
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 30 1.5
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 2.0
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 2.0
AL132949-28|CAB61106.1| 209|Caenorhabditis elegans Hypothetical... 29 2.0
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 2.0
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 2.0
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 29 2.6
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 2.6
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 29 2.6
Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z19154-7|CAE17740.1| 342|Caenorhabditis elegans Hypothetical pr... 28 6.0
U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 28 6.0
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 27 8.0
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 27 8.0
U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of s... 27 8.0
U40028-7|AAA81118.1| 155|Caenorhabditis elegans Hypothetical pr... 27 8.0
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 27 8.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 27 8.0
>U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily
assigned gene nameprotein 174 protein.
Length = 128
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +2
Query: 287 HHGKDTWKKYRNFTYFVLLPLIAIQSFNA-------LGHEPPPKGPCRDYEYMRVRTKRF 445
H+ +TWKK + +P +A+ + A + HE P +Y ++ VR K F
Sbjct: 45 HNASETWKK---IFFIASIPCLALTMYAAFKDHKKHMSHERPEHV---EYAFLNVRNKPF 98
Query: 446 PWGDGVKSFYHNEHVNHLPG 505
PW DG S +HN+ +PG
Sbjct: 99 PWSDGNHSLFHNKAEQFVPG 118
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVP 280
C PP P C PP P I PP C P P+C P P
Sbjct: 30 CPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPP 68
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 164 CGPPRPSKCGCP---PKPGSGKVIVPPADCKPGPICYNPCV 277
CG P+P+ CGC P+ S V PP C P Y P V
Sbjct: 38 CGTPQPASCGCAPACPQAPSCPVCPPPQPCPAPPAAYCPQV 78
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Frame = +2
Query: 164 CGP-PRPSKCGCPPKPGSGKVIVPPAD---------CKPGPICYNPC 274
CGP P P+ C CPP P PP CK P+ NPC
Sbjct: 100 CGPSPVPAPC-CPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVPENPC 145
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 155 YSLCGPPRPSKCGCPPKPGSGKVIVPPAD---CKPGPICYNPCVP 280
++ CG PRPS CP P + PP C P P+ PC P
Sbjct: 68 FNCCGAPRPSPSCCPYVPPAPLPPPPPPASPCCGPSPV-PAPCCP 111
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 497 LPGECEAPPLDCD*CDKP 550
+P C APP++C CD P
Sbjct: 191 VPCRCGAPPMECPNCDMP 208
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPCVP 280
C P P G P KPG GK P A PG PC P
Sbjct: 102 CNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEP 141
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPCVP 280
C P P G P KPG GK P A PG PC P
Sbjct: 102 CNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEP 141
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPCVP 280
C P P G P KPG GK P A PG PC P
Sbjct: 102 CNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEP 141
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPCVP 280
C P P G P KPG GK P A PG PC P
Sbjct: 102 CNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEP 141
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 167 GPPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
G P P + G PP P +G PPA P P
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
PP P G PP GSG PPA P P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPP 266
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
PP P G PP P +G PP P P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 167 GPPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
G P P + G PP P +G PPA P P
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
PP P G PP GSG PPA P P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPP 287
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
PP P G PP P +G PP P P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 167 GPPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
G P P + G PP P +G PPA P P
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
PP P G PP GSG PPA P P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPP 272
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
PP P G PP P +G PP P P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +2
Query: 164 CG-PPRPSKCGCPPKPGSGKVI--VPPADCKPGP-ICYNP---CVP 280
CG P+P C PP P I PP C P P IC P C+P
Sbjct: 636 CGCQPQPQNCCAPPAPCCLPTIPCCPPIPCCPQPKICCQPAPVCLP 681
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +2
Query: 164 CG-PPRPSKCGCPPKPGSGKVI--VPPADCKPGP-ICYNP---CVP 280
CG P+P C PP P I PP C P P IC P C+P
Sbjct: 281 CGCQPQPQNCCAPPAPCCLPTIPCCPPIPCCPQPKICCQPAPVCLP 326
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +2
Query: 164 CG-PPRPSKCGCPPKPGSGKVI--VPPADCKPGP-ICYNP---CVP 280
CG P+P C PP P I PP C P P IC P C+P
Sbjct: 233 CGCQPQPQNCCAPPAPCCLPTIPCCPPIPCCPQPKICCQPAPVCLP 278
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical protein
K08E7.5a protein.
Length = 1221
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = +2
Query: 164 CG-PPRPSKCGCPPKPGSGKVI--VPPADCKPGP-ICYNP---CVP 280
CG P+P C PP P I PP C P P IC P C+P
Sbjct: 961 CGCQPQPQNCCAPPAPCCLPTIPCCPPIPCCPQPKICCQPAPVCLP 1006
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 158 SLCGPPRPSKCGCPPKPG-SGKVIVPPADCKPGPICYNPCVP 280
S C P P G P KPG GK P PG PC P
Sbjct: 98 SCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEP 139
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 158 SLCGPPRPSKCGCPPKPG-SGKVIVPPADCKPGPICYNPCVP 280
S C P P G P KPG GK P PG PC P
Sbjct: 98 SCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEP 139
>AL132949-28|CAB61106.1| 209|Caenorhabditis elegans Hypothetical
protein Y53F4B.32 protein.
Length = 209
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 281 RFHHGKDTWKKYRNFTYFVLLPLIAIQSF 367
RF HG TW+K ++ T F +P++ + F
Sbjct: 33 RFPHGDGTWEKLKDKTPFGQVPVLYVDGF 61
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 158 SLCGPPRPSKCGCPPKPG-SGKVIVPPADCKPGPICYNPCVP 280
S C P P G P KPG GK P PG PC P
Sbjct: 98 SCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEP 139
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +2
Query: 164 CG-PPRPSKCGCPPKPG-SGKVIVPPADCKPGP 256
CG PP P C PP P G PPA P P
Sbjct: 31 CGAPPPPPACAPPPAPACGGGAPPPPAYAAPAP 63
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 266 NPCVPRFHHGKDTWKKYRNFTYFVLLPLIAIQSFNALG-HEPPPKGPCRDYEYMRVRTKR 442
+PC+ +F + +T KKY +LL L +++ ALG H PCR +R+
Sbjct: 785 HPCLTKFEYLPETEKKYN-----ILLALTTMKTIEALGYHLITEDPPCR-LRAVRL-GPN 837
Query: 443 FPWGDGVKSFYHNEHVNHLPGECE 514
F +G K + H LP E +
Sbjct: 838 FQQQNGYKPGPLDTHEIQLPAELQ 861
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKP 208
C PP P CGC P P
Sbjct: 39 CAPPPPPMCGCAPPP 53
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 266 NPCVPRFHHGKDTWKKYRNFTYFVLLPLIAIQSFNALG-HEPPPKGPCRDYEYMRVRTKR 442
+PC+ +F + +T KKY +LL L +++ ALG H PCR +R+
Sbjct: 906 HPCLTKFEYLPETEKKYN-----ILLALTTMKTIEALGYHLITEDPPCR-LRAVRL-GPN 958
Query: 443 FPWGDGVKSFYHNEHVNHLPGECE 514
F +G K + H LP E +
Sbjct: 959 FQQQNGYKPGPLDTHEIQLPAELQ 982
>Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 347 LIAIQSFNALGHEPPPKGPCRDYEYMRVRTKRFPWG--DGVKSFYHNEHVNHLP 502
++ + F G PKG + Y + T R W DG +FY E V+H P
Sbjct: 326 IVKVTKFFLSGFYKKPKGLKKPYNPILGETFRCKWEHPDGSTTFYMAEQVSHHP 379
>Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 347 LIAIQSFNALGHEPPPKGPCRDYEYMRVRTKRFPWG--DGVKSFYHNEHVNHLP 502
++ + F G PKG + Y + T R W DG +FY E V+H P
Sbjct: 326 IVKVTKFFLSGFYKKPKGLKKPYNPILGETFRCKWEHPDGSTTFYMAEQVSHHP 379
>Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical
protein ZK1086.1b protein.
Length = 770
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 347 LIAIQSFNALGHEPPPKGPCRDYEYMRVRTKRFPWG--DGVKSFYHNEHVNHLP 502
++ + F G PKG + Y + T R W DG +FY E V+H P
Sbjct: 363 IVKVTKFFLSGFYKKPKGLKKPYNPILGETFRCKWEHPDGSTTFYMAEQVSHHP 416
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 167 GPPRPSKCGCPPKP 208
GP RP +C CPP P
Sbjct: 29 GPQRPQQCCCPPPP 42
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGSGKVIV-----PPA-DCKPGPICYNPC-VPRF 286
C PP PS PP P + + PPA C P Y PC VP++
Sbjct: 241 CLPPPPSPVCMPPPPPPCPMPIPCPPPPPACSCPPPVTMYQPCMVPQY 288
>Z19154-7|CAE17740.1| 342|Caenorhabditis elegans Hypothetical
protein C40H1.8 protein.
Length = 342
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 351 IKGNNTKYVKFLYFFQVSLP-W*NRG 277
+K N T+Y+ LY+F + LP W + G
Sbjct: 306 LKPNATQYIDHLYYFNIDLPGWGHAG 331
>U55366-3|AAY86188.1| 118|Caenorhabditis elegans Hypothetical
protein F41F3.8 protein.
Length = 118
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGSGKVIVPPADCKPG 253
PP P KC CPP P P+ C G
Sbjct: 56 PPLPPKCECPP-PTCNSCAPAPSSCGCG 82
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGSGKVIVPPADCKPGP 256
C PP P CGC G PPA P P
Sbjct: 29 CAPPPPPACGC-----GGGAAPPPAYVAPAP 54
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPCVP 280
C P P G P KPG G+ P PG PC P
Sbjct: 102 CLPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEP 141
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPCVP 280
C P P G P KPG G+ P PG PC P
Sbjct: 97 CLPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEP 136
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 170 PPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPC 274
P RP K G P PG+ GK V P + P C PC
Sbjct: 119 PGRPGKPGAPGLPGNPGKPPVQPCEPITPPPC-KPC 153
>U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of
serine protease likeprotein protein 2, isoform a
protein.
Length = 135
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 185 KCGCPPKPGSGKVIVPPADCKPGPI--CYNPCVPRFHHGKDTWKKYRNFTYF 334
+CG PK + + I+ DCK G + CV K+T K N T+F
Sbjct: 36 QCGYTPKACTEQCIMNTCDCKDGFVRNSLGKCVEVSECTKETTKCPENETFF 87
>U40028-7|AAA81118.1| 155|Caenorhabditis elegans Hypothetical
protein T05A7.3 protein.
Length = 155
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 116 KRPLIWTVEK--ARRYSLCGPPRPSKCGCPPKPGSGKVIVPPADCKP 250
K L W+ A +Y LC P CG PP P VI+ PA P
Sbjct: 4 KTDLTWSKSDCAATQYFLCKRPTGITCG-PPTPAP-PVIITPAPTNP 48
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +2
Query: 161 LCGPPRPSKCG-CPPKPGSGKVIVPPADCKPGP 256
+C PP P CPP P PP C P P
Sbjct: 53 VCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPP 85
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 CGPPRPSKCGCPPKPGS-GKVIVPPADCKPGPICYNPCVP 280
C P P G P KPG G+ P PG PC P
Sbjct: 97 CLPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEP 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,618
Number of Sequences: 27780
Number of extensions: 344485
Number of successful extensions: 1144
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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