Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i12
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 28 1.1
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 3.2
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 3.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 4.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.5
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 9.9
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 9.9
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 9.9
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 9.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 9.9
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/72 (19%), Positives = 32/72 (44%)
Frame = +2
Query: 401 ETPTSRYDQPNAFLDKLQSKYPMLYSILQNEASPELKQRIDRDRNKTTYRVDYCETGPGA 580
+TP S YD P++ + + P Y + N ++ D N +++ ++ +
Sbjct: 46 KTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSS 105
Query: 581 KFEGLQRAADDS 616
K + + A ++S
Sbjct: 106 KLQSCKSACENS 117
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 661 RVPRKPHGLRAGARPTVIGCSLQTLEFSSGSCFAVIYPVSGLVSISV 521
++ K H LRA +GC+L T + S + P+S + S+
Sbjct: 192 KLKSKIHKLRAHGTSLKVGCALSTDDVLSNDFLPISAPISSSLGSSI 238
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 479 CCTALGISIEAYLKMHWADRSEMLEFQDSQRLARDTVL 366
CCT L +S + + HW + F+ R R+T L
Sbjct: 328 CCTLLCLSPKQFFLKHWISSLDAAFFRVKDRRLRNTGL 365
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 668 RGKGPQEAAWAARRGPTHCHRLLAA 594
+ Q A A R GP HC+RL ++
Sbjct: 776 KANADQRAGRAGRTGPGHCYRLYSS 800
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 417 RDVGVSGLAATRTGYSFGSRRGPIISFRLQPPSFPGGSC 301
R G + +TGY+ + G + S +Q S P G C
Sbjct: 1744 RPEGYPYVILNQTGYNLSIQYGNLNSSEMQSLSLPSGKC 1782
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 317 KEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNAF 439
KEG W +E++ LLD K+ +V + E S D P A+
Sbjct: 221 KEGAWRTSELILYLLDTKM---KVISDKEGYESLKDLPPAY 258
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3
Query: 9 SYISTLWILFCNP 47
S IS LWILFC P
Sbjct: 214 SAISALWILFCLP 226
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +2
Query: 332 SRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDKLQSKYPMLYSILQNEASPELK 511
SR +++G LL PK++ S + + PN+ L +L L + NEA L+
Sbjct: 584 SRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERV-NEAIGVLQ 642
Query: 512 QRIDRD 529
+ +D++
Sbjct: 643 EFVDQE 648
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 346 NGSSPRSKTVSRASRCES*NSNISLRSAQCIFR*ASIEIPNAVQHP 483
NG S RS S C+S +S S+ R +S+ N+VQ P
Sbjct: 247 NGPSFRSANASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQP 292
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 254 RPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPK--LYPVRVAASPETPTSR 418
R D R P+ + + PQLPP S + P +DP+ LY + + P ++
Sbjct: 357 RSTDEREPERTSEDPPQLPPSPSSPSSPALSVKPNIDPQPPLYNSTLTTTRSIPANK 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,790
Number of Sequences: 5004
Number of extensions: 68037
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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