Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i12
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1726 - 29062654-29064414                                         33   0.27 
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282...    31   0.83 
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524...    30   1.5  
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686...    30   1.9  
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166...    29   2.5  
01_06_1368 - 36715630-36715698,36715835-36716284                       29   2.5  
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    29   3.3  
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558...    29   4.4  
02_05_0204 - 26721498-26721545,26721731-26721823,26723822-267239...    29   4.4  
08_01_0763 + 7324193-7324558,7325376-7325450                           28   5.9  
02_05_0616 - 30380558-30380822,30380914-30381045,30381138-303812...    28   5.9  
10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777           28   7.7  
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511...    28   7.7  
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466...    28   7.7  
08_01_0111 + 850047-850218,850366-850649,851017-851763                 28   7.7  
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810...    28   7.7  
04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795...    28   7.7  
03_02_0517 + 9054816-9055655                                           28   7.7  
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969...    28   7.7  

>07_03_1726 - 29062654-29064414
          Length = 586

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
 Frame = +2

Query: 164 GGDGETSGLADTPKLSGQEL------AFYQACMQHTRPPDCRCPQYSGGEMPQLPPGKEG 325
           G DG+  G A     S  EL      +   A MQH  PP  R P   G   P  P G E 
Sbjct: 197 GCDGDAGGAAPAGPHSLHELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPEGSEA 256

Query: 326 GW 331
            W
Sbjct: 257 WW 258


>11_06_0656 +
           25926192-25926289,25927530-25927659,25928248-25928294,
           25929274-25929388,25929504-25929753,25930079-25930239,
           25930372-25930567,25930672-25930836,25930918-25931070,
           25931160-25931248,25931385-25931423,25931460-25931681,
           25933503-25934165
          Length = 775

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +3

Query: 252 RGRPTADARSTLEGRCRNCRLGRRAAG 332
           RGR  A AR    GRCR  R GR A G
Sbjct: 662 RGRRGAGARPAARGRCRRGRRGRAAGG 688


>04_04_1355 +
           32851514-32851696,32852132-32852224,32852334-32852485,
           32852702-32852837,32852947-32853102,32853233-32853312,
           32853475-32853568
          Length = 297

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 521 RSFA*ALETLRSGGCCTALGISIEAYLKMHWADRSEMLEFQDSQRLARDTVL 366
           R +A AL+   SGG    L ++++  L+MH +D +E  + +  Q+L  D  L
Sbjct: 126 RDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEK-QLRIMQQLDEDHTL 176


>03_02_0254 +
           6862762-6863663,6863994-6864241,6864323-6864465,
           6864532-6864570,6865403-6865501
          Length = 476

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 50  IENEQFKILV*TDKHTNKMDHYLTTYRKDYLWPNLPHVGGDGETSGLADTPK 205
           +EN ++ ++  TD +T  +  Y+ ++R    WPNLP + G   +SGL    K
Sbjct: 349 LENPRWYVVWSTDMNTRILPEYVVSFR----WPNLPQMEG---SSGLGSKLK 393


>05_01_0224 -
           1662818-1663033,1663183-1663266,1663315-1663434,
           1664527-1664655,1664743-1664988
          Length = 264

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 245 QHTRPPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYP 379
           +H  PP  R P   G   P  P G E  W  + +  P   P  +P
Sbjct: 193 KHYDPPQRRFPLEKGVPPPWWPEGTEAWWPESVMPSPSWPPPSFP 237


>01_06_1368 - 36715630-36715698,36715835-36716284
          Length = 172

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -3

Query: 350 PLSHSDSSRPPSQAAVAASPLQSTAGIGSRAASYAACM 237
           P S S S+   S AAVAASPL    G G     + A M
Sbjct: 29  PASASTSTSTSSSAAVAASPLAQAHGAGEPRRLFEAFM 66


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
 Frame = +2

Query: 275 PQYSGGEMPQLPPGKEGG------WSRNEIM-----GPLLDPKLYPVRVAASPETPTSRY 421
           P    G  P  PP +  G      W+R E+      GP + P  YP RVA  PE   +  
Sbjct: 69  PSDDPGSRPPPPPRRSQGPPQRQQWTREEMRFVKDAGPSITPVSYPARVAPLPEDRPAEE 128

Query: 422 DQPNAFLDK 448
             P    D+
Sbjct: 129 APPEGPADE 137


>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
            5588428-5588484,5588663-5588800,5588901-5588966,
            5589234-5589452,5589522-5589737,5589813-5589884,
            5589952-5590205,5590356-5590525,5590840-5591029,
            5592211-5592331,5592838-5592921,5593003-5593365,
            5594530-5594724,5594938-5595933,5596329-5596370
          Length = 1240

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 530  RNKTTY--RVDYCETGPGAKFEGLQRAADDSGSG 625
            RN   Y  R  YC +GPGA  E    + ++S SG
Sbjct: 1096 RNSIAYSTRTSYCGSGPGASSESATTSVNNSYSG 1129


>02_05_0204 -
           26721498-26721545,26721731-26721823,26723822-26723931,
           26724029-26724129,26724691-26724917
          Length = 192

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 454 IEIPNAVQHPPERSVSRAQAKDRQRSKQDHLQGR 555
           I +PNA  HP   +V RA    R R    HL GR
Sbjct: 8   IVVPNACSHPRNDAVPRA-GSSRSRRSSLHLAGR 40


>08_01_0763 + 7324193-7324558,7325376-7325450
          Length = 146

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +1

Query: 202 KTVWSRISVLPSMHAAYEAARLPMPAVLWRGDAATAAWEGGRLESE*DNGSSPRSKTVSR 381
           + + S+ S  PS+H        P  A  W    + AAW GG+       G + R   VSR
Sbjct: 64  RPIQSQPSSHPSLHEDGGDGDKPFKAEDWHQGGSNAAWRGGK-------GGTGRRGGVSR 116

Query: 382 ASRCES*NSNI 414
            SR  +   N+
Sbjct: 117 MSRGRAETHNL 127


>02_05_0616 -
           30380558-30380822,30380914-30381045,30381138-30381279,
           30381377-30381569,30381657-30381890,30381992-30382189
          Length = 387

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 329 SRPPSQAAVAASPLQSTAGIGSRAASYAACMLGRT 225
           S PP+QAA  ASP ++ A     AA+ +  +L  T
Sbjct: 13  SPPPAQAAARASPRRAPASAAPVAAAISTALLALT 47


>10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777
          Length = 323

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 541 GLVSISVDPLLELWRRFVLEDAVQHWVFR 455
           GLV++S D L ++W R V  + V  WV +
Sbjct: 197 GLVTLSYDSL-QIWERKVCSEGVTRWVLQ 224


>09_06_0374 +
           22649455-22650024,22650085-22650637,22650812-22651147,
           22651171-22652605,22652939-22653062
          Length = 1005

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +2

Query: 158 HVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCRCPQYSGGEMPQLPPGKEGGWSR 337
           H G  G   G   TP+  G+           +RP D R  +  GG  P  PP + GG +R
Sbjct: 293 HDGAGGSRRGEQSTPR-GGRASGSRDRGPGSSRPADARGKRKQGGTPPPSPP-RGGGAAR 350


>09_04_0574 +
           18645363-18645870,18645995-18646491,18646631-18646696,
           18646921-18646989,18647401-18647466
          Length = 401

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 350 PLSHSDSSRPPSQAAVAASP 291
           P +  +SS+PPS A+ AASP
Sbjct: 281 PAASKNSSKPPSSASAAASP 300


>08_01_0111 + 850047-850218,850366-850649,851017-851763
          Length = 400

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 341 HSDSSRPPSQAAVAASPLQSTAGIGSRAASYAACMLGRTLIL 216
           H     PP ++  AA+ L ST   G  AAS AA      L+L
Sbjct: 267 HGFMKLPPLESPSAATALSSTPSTGGDAASSAAAAAADHLLL 308


>05_06_0276 +
           26878732-26879574,26879920-26880387,26880800-26881021,
           26881153-26881278,26881309-26881573,26881719-26881936
          Length = 713

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 343 DNGSSPRSKTVSRASRCES*NSNISLRSAQCIFR*ASIEIPNAVQHPPERSVSRAQAKDR 522
           D GS PR +  S A+R  S      ++S       + +    + +  P RS+ R+  +DR
Sbjct: 25  DRGSPPRRRERSPAARSRSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDR 84

Query: 523 QRSK 534
            + +
Sbjct: 85  VKEQ 88


>04_04_0406 +
           24978845-24978970,24979073-24979142,24979541-24979556,
           24979813-24979930,24980015-24980137,24980249-24980408,
           24980470-24980546,24980635-24980687,24981263-24981317,
           24981664-24981858
          Length = 330

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 600 RCRPSNLAP---GPVSQ*STL*VVLFRSLSILCLSSGDA 493
           RC P  L P   GP+++  T  VVL R+  I+  ++GDA
Sbjct: 104 RCAPCVLGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDA 142


>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 257 PPDCRCPQYSGG---EMPQLPPGKEGGWSRNEIMGPLL 361
           P    CP+  GG   + PQ PP   GG  R   M P++
Sbjct: 21  PSTVVCPECDGGFLEQFPQPPPRGGGGSGRRGAMNPVI 58


>01_06_1678 -
           39095986-39096205,39096400-39096477,39096578-39096949,
           39097374-39097671,39097867-39098077,39098331-39099023
          Length = 623

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 257 PPDCRCPQYSGGEMPQL-PPGKEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYD 424
           PP CR P   G   P   P  ++  W  N  +     P L P ++A  P+   +R D
Sbjct: 145 PPPCRVPPPPGYRQPMAWPARRDRAWYANVEL-----PPLAPAKLAGPPDPVRARGD 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,658,437
Number of Sequences: 37544
Number of extensions: 568323
Number of successful extensions: 2146
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2143
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)