Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i12
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38780| Best HMM Match : Astacin (HMM E-Value=0) 31 1.1
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 30 1.5
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034) 29 3.4
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3) 29 3.4
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12) 29 3.4
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08) 29 4.5
SB_55652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_59628| Best HMM Match : I-set (HMM E-Value=5e-21) 28 6.0
SB_33963| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 28 6.0
SB_23563| Best HMM Match : rve (HMM E-Value=3.3e-25) 28 7.9
>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
Length = 1153
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 9 SYISTLWILFCNPKSKMNN-SKF*CKRTNI-QTRWIII 116
S++S LW+L C P S+M C ++ Q+RW ++
Sbjct: 676 SWVSPLWMLTCQPHSRMKEMPNIECPTVSVLQSRWFLL 713
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 663 QGSPGSRM---GCAQGPDPLSSAARCRPSNLAPGP 568
QG PG G +GPDP AA + SN APGP
Sbjct: 60 QGPPGGSTQTAGGIKGPDPNDLAAGIKGSNGAPGP 94
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 200 PKLSGQELAFYQACMQHTRPPDCRCPQ----YSGGEMPQLPPGKEGG 328
P + GQ Y MQH P Q Y G +P PPG+EGG
Sbjct: 974 PGMFGQARYQYPPAMQHAGPFYNSQIQPNMYYDRGSLPVYPPGREGG 1020
>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 9 SYISTLWILFCNPKSKMNN-SKF*CKRTNI-QTRWIII 116
S++ LW+L C P S+M C ++ Q+RW ++
Sbjct: 85 SWVRPLWMLICQPHSRMKEMPNIECPTVSVLQSRWFLL 122
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 54 KMNN--SKF*CKRTNIQTRWIIISPPTEKIICGRTYLMWVAMGKPQA*LTHQNCLVKN*R 227
K+NN S + N Q R +PP +CG ++ + KP L H+ N +
Sbjct: 606 KLNNRASSLELRENNAQCRQTCRTPPNYAELCGSLWISRITRKKPNYALPHKRVAFSNSQ 665
Query: 228 STKHA 242
+ K A
Sbjct: 666 AKKLA 670
>SB_19545| Best HMM Match : VWA (HMM E-Value=0.00034)
Length = 286
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 327 PPSFP-GGSCGISPPEY--CGHRQSG 259
PPS P GGSCG +PPE CG +G
Sbjct: 114 PPSPPSGGSCGDAPPEEIPCGESVAG 139
>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
Length = 787
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 179 FPHRHPHEVSSATDNLFCRW*DNDPSCLYVCP 84
FP+ H VSS T ++F + DN P L P
Sbjct: 277 FPYSLVHRVSSKTSDIFLKTDDNKPKVLLFSP 308
>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
Length = 501
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -3
Query: 530 DLCRSFA*ALETLRSGGCCTALGISIEA----YLKMHWADRSEMLEFQDSQRLARDTVLD 363
+ C+ FA + + GC ALGIS+E+ Y + + D S L D L+ +T+ +
Sbjct: 269 EYCKMFA--VHHTQIQGCAKALGISVESEEEDYQLVDFQDVSNTL-IPDMSHLSAETMKN 325
Query: 362 LGEDPLSHSDSSRPPSQ 312
ED + SSR Q
Sbjct: 326 DEEDDTTPRKSSRQCKQ 342
>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
Length = 769
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 439 FR*ASIEIPNAVQHPPERSVSRAQAKDRQRSKQD 540
FR A + P AVQH P+ V +A+ ++ + D
Sbjct: 82 FRLAKLRQPTAVQHKPDTQVQQAKEREMTETSLD 115
>SB_55652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +2
Query: 458 KYPMLYSILQNEASPELKQRIDRDRNKTTYRVDYCETGPGAKFEGLQRAADDSGSGPCAQ 637
K L +L EL +R+ N T + G +FE + +DD G+ P
Sbjct: 272 KKSTLSPLLPATRQTELAKRVITSLNVRTNNMGELVATKGEQFEVREIISDDEGNKPVKG 331
Query: 638 PMRLPGDP 661
++ GDP
Sbjct: 332 DVKAVGDP 339
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -1
Query: 511 LELWRRFVLEDAVQ-HWVFRL--KLI*KCIGLIVARCWSFRTRSDSHGIQFW 365
L +W + V E +Q W F+ ++ +C L++A C +++ S+ HG +W
Sbjct: 800 LNVWPKAVPEGHIQVGWRFKFPDEVSAECSTLVIAACRNYKMNSELHG--YW 849
>SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 164 GGDGETSGLADTP-KLSGQELAFYQACMQHTRPP-DCRCPQY-SGGE 295
GG G TS +DTP S + L Y AC R C Q+ SGGE
Sbjct: 81 GGSGGTSSSSDTPTSPSSKTLPLYVACHSRARGGLKPLCHQFTSGGE 127
>SB_59628| Best HMM Match : I-set (HMM E-Value=5e-21)
Length = 209
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 199 TKTVWSRISVL--PSMHAAYEAARLPMPAVLWRGDAATAAWEGGR 327
T T+ + +S L S+ A LP+PAV+W+ AT +GGR
Sbjct: 16 TVTIGANVSALRGSSITLTCTAEGLPVPAVVWKKGGATLQ-QGGR 59
>SB_33963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 435 HF*ISFNRNTQCCTASSRTKRLQSSSKGSTEIETRPLTG*ITAKQDPELNSRVCSEQPMT 614
H I+ R + T TK+ S+ + IET+ + +T P +S V ++
Sbjct: 329 HSDINTGRELRQRTGKGSTKQRSSTLSTISPIETKETSKNVTEATRPIRSSTVATDGKPE 388
Query: 615 VGRAPARS 638
V +AP RS
Sbjct: 389 VSKAPERS 396
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 6.0
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = -3
Query: 425 DRSEMLEFQDSQRLARDTVLDLGED-PLSHSDSSRPPSQAAVAASPLQSTAGIGSRAASY 249
D + ML+++ R+ + LD D P+ DSS P S AA + + + STA +R +
Sbjct: 1392 DPAMMLDYES--RIVSEDNLDKQTDCPMDAPDSSDPTSTAAPSTTTVTSTAVCVARYTN- 1448
Query: 248 AACMLGRTLILDQTVLVCQLGLRFPHRHPHEVSSATDNLFC 126
G ++ D +G ++ RH E S +NL C
Sbjct: 1449 -----GMWVLQD-----IPMGCKYGERH-FETSEKNNNLTC 1478
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 269 RCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQPNAFLDK 448
+C G + PP EG M + L+P+RV ++P S + A LD+
Sbjct: 1004 KCIDLPGNYSCRCPPDYEGANCETIKMEASVSTVLFPIRVVVRQDSPVSIVRKRAAVLDR 1063
Query: 449 LQS 457
S
Sbjct: 1064 AVS 1066
>SB_23563| Best HMM Match : rve (HMM E-Value=3.3e-25)
Length = 640
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 485 QNEASPELKQRIDRDRNKTTYRVDY 559
+++ +PEL++R R+R K +Y DY
Sbjct: 613 EDQETPELRERPKRERRKPSYLKDY 637
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,414,764
Number of Sequences: 59808
Number of extensions: 578887
Number of successful extensions: 1766
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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