Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i12
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical...    31   0.69 
At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family pro...    30   1.6  
At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2) iden...    29   2.1  
At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) iden...    29   2.1  
At2g15550.1 68415.m01781 hypothetical protein similar to zinc fi...    29   2.8  
At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family pro...    29   3.7  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At2g37730.1 68415.m04627 fringe-related protein similarity to pr...    28   4.9  
At5g10120.1 68418.m01172 ethylene insensitive 3 family protein c...    28   6.5  
At4g33400.1 68417.m04747 dem protein-related / defective embryo ...    28   6.5  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    28   6.5  
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai...    27   8.5  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    27   8.5  

>At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical to
           ethylene-insensitive3 GI:2224933 from [Arabidopsis
           thaliana]
          Length = 628

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +2

Query: 236 ACMQHTRPPDCRCPQYSGGEMPQLPPGKEGGW 331
           A MQH  PP  R P   G   P  P GKE  W
Sbjct: 192 ALMQHCDPPQRRFPLEKGVPPPWWPNGKEDWW 223


>At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family
           protein similar to TRAF6-regulated IKK activator 1 beta
           Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 159

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 592 TLEFSSGSCFAVIYPVSGLVSISVDPLLELWRR-FVLED 479
           T+ F S    A + P +G+V  S  P+L  WRR F +ED
Sbjct: 80  TVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMED 118


>At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2)
           identical to ethylene-insensitive3-like2 (EIL2)
           GI:2224929 from [Arabidopsis thaliana]
          Length = 518

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +2

Query: 224 AFYQACMQHTRPPDCRCPQYSGGEMPQLPPGKEGGWSR 337
           A   A   H  PP  R P   G   P  P GKE  W +
Sbjct: 191 ALLSALFPHCNPPQRRFPLEKGVTPPWWPTGKEDWWDQ 228


>At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1)
           identical to ethylene-insensitive3-like1 GI:2224927 from
           [Arabidopsis thaliana]
          Length = 584

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
 Frame = +2

Query: 164 GGDGETSGLADTPKLSGQEL------AFYQACMQHTRPPDCRCPQYSGGEMPQLPPGKEG 325
           GG  + + L      + QEL      +   A MQH  PP  R P   G   P  P G E 
Sbjct: 164 GGSNDCNSLVGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPNGNEE 223

Query: 326 GW 331
            W
Sbjct: 224 WW 225


>At2g15550.1 68415.m01781 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 589

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 257 PPDCRCPQYSGGEMPQLPPGKEGGWSRNEIMGPLLDPKLYPVRVAASPETPTSRYDQP 430
           PP  R P +S GE    PP K+     ++    L D  L P R      +PT   ++P
Sbjct: 280 PPSSR-PYHSRGEKSSAPPNKQSSPLLSDSQLTLSDTVLAPSRAKQITSSPTYVRERP 336


>At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family
           protein similar to TRAF6-regulated IKK activator 1 beta
           Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 158

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 592 TLEFSSGSCFAVIYPVSGLVSISVDPLLELWRR-FVLED 479
           T+ F +    A + P +G+V  S+ P+L  WRR + +ED
Sbjct: 80  TVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMED 118


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 344 SHSDSSRPPSQAAVAASPLQSTAGIGSRAASYAA 243
           S SDSS P S ++V++SP  S++ + S   SY++
Sbjct: 451 SDSDSSSPDSSSSVSSSP-DSSSSVSSSPDSYSS 483


>At2g37730.1 68415.m04627 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 532

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = -3

Query: 431 WADRSEMLEFQDSQRLARDTVLDLGEDPLSHSD-SSRPPSQAAVAASPLQSTAGIGSRAA 255
           W DRS   E      + R  +    E PL+ +  S+ PP Q +   S    T   GSR+A
Sbjct: 112 WRDRSRYSELWWRPNVTRGFIWLDEEPPLNMTWLSTSPPYQVSADTSRFSYTCWYGSRSA 171

Query: 254 SYAACMLGRTLILDQT 207
              A ++  T  L  T
Sbjct: 172 IRMARIIKETFELGLT 187


>At5g10120.1 68418.m01172 ethylene insensitive 3 family protein
           contains Pfam profile: PF04873 ethylene insensitive 3
          Length = 471

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 236 ACMQHTRPPDCRCPQYSGGEMPQLPPGKEGGW 331
           A MQH  PP  R P   G   P  P G E  W
Sbjct: 169 ALMQHCMPPQRRFPLEKGIAPPWWPTGTELWW 200


>At4g33400.1 68417.m04747 dem protein-related / defective embryo and
           meristems protein-related identical to dem GI:2190419
           from [Lycopersicon esculentum]
          Length = 645

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 398 PETPTSRYDQPNAFLDKLQSKYPMLYSILQNEASPELKQRIDRDRNKTTY 547
           P++P+S  D   A L  L+ KYP+  S    + S  L + I+ +  K  +
Sbjct: 56  PKSPSSSLDDVEAKLQALKLKYPLTQSAPSTQNSARLFRYINGNTPKAKW 105


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -2

Query: 444 SKNALG*S*RDVGV-----SGLAATRTGYSFGSRRGPIIS-FRLQPPSFPGGSCGISPPE 283
           S N LG +    GV     S L ++  G+  G   G   + FR  PP+F GGS G  P  
Sbjct: 368 SSNLLGQNPSTTGVGYLPGSPLNSSFPGFGVGYLPGSSSNLFRSNPPNFGGGSIGAGPQH 427

Query: 282 Y 280
           +
Sbjct: 428 F 428


>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
           domain-containing protein similar to SP|P49373
           Transcription elongation factor S-II (TFIIS)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF01096: Transcription factor S-II (TFIIS)
          Length = 378

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 553 YPVSGLVSISVDPLLELWRRFVLEDAVQ 470
           +PV  + S++ D LLE+W++ V+E+  +
Sbjct: 66  HPVEDIKSVATD-LLEIWKKVVIEETAK 92


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
            protein contains proline-rich extensin domains,
            INTERPRO:IPR002965
          Length = 1696

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 122  TYRKDYLWPNLPHVGGDGETSGLADTPKLSGQELAFYQACMQHTRPPDCR 271
            +Y  D+L   LP    D  TSG A+ P   G  L      +Q     DC+
Sbjct: 1551 SYSTDHLTTGLPESIMDSATSGEANFPHSGGDTLKTSDTLIQTGYASDCQ 1600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,008,714
Number of Sequences: 28952
Number of extensions: 400648
Number of successful extensions: 1188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)