Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i11
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    32   0.36 
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    29   1.9  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   2.6  
At2g04900.1 68415.m00509 expressed protein                             29   2.6  
At1g64550.1 68414.m07317 ABC transporter family protein similar ...    28   4.5  
At3g11310.1 68416.m01375 hypothetical protein                          28   5.9  
At3g07090.1 68416.m00843 expressed protein                             28   5.9  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   5.9  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   5.9  

>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 407 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER--VVPIVETGA 565
           F H     +N++A+D+ +     G     +P++ENVD  K+T      PIV +G+
Sbjct: 19  FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGS 73


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 237 KVGISFHKGANRLN---GERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTA 67
           K+ +S  KG   L+   G +FSHGN+  S+V+    +   +S  G    +A P   M+ A
Sbjct: 461 KITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIMKQESDACISDFGLTPLMAVPIAPMRGA 520

Query: 66  KRRGENI 46
             R   +
Sbjct: 521 GYRAPEV 527


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +2

Query: 386 HDVFASQFFHTYSLP-VNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 562
           H +F+     T S P V  S A ++ EL        T  + E+ D+  ++E V P+ +  
Sbjct: 244 HPIFSKHDALTLSTPQVLESRALLSHELLRKRNKD-TVVVPESSDRGADSENVEPLFQPT 302

Query: 563 APYKKDEP--VEKTTVETL 613
            P  K EP  V+  TVET+
Sbjct: 303 NPSPKSEPEPVKTITVETI 321


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -3

Query: 540 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 427
           T S++ ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 58  TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At1g64550.1 68414.m07317 ABC transporter family protein similar to
           ABC transporter protein GB:AAF31030 GI:6899653 from
           [Leishmania major]
          Length = 715

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +2

Query: 425 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIV----ETGAPYKKDEPVE 592
           +P N     V  E+  D    +   ++ ++++TK  E  + I+    ET  P  KD    
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPT 287

Query: 593 KTTVE 607
           K TVE
Sbjct: 288 KDTVE 292


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +2

Query: 353 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-------SDGYLVVTAPISEN 511
           V GS+   +DDH +     F +   P +SS  D+   +T        D Y+V+   +   
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEGGADDDHYIVLNHLVESP 398

Query: 512 VDKTKNTE 535
            D+  ++E
Sbjct: 399 HDRAPSSE 406


>At3g07090.1 68416.m00843 expressed protein
          Length = 265

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 473 DGYLVVTAPISENVDKTKNTERVVPIVETGAPYK--KDEPV 589
           DG  +V AP  E  + +  TE+V P+++  A  +  KD+P+
Sbjct: 177 DGPQIVIAPKLEAAETSTATEKVPPVIQPSASKEKVKDDPL 217


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 492 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 406
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 492 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 406
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,693
Number of Sequences: 28952
Number of extensions: 201226
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)