Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i10
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24550.1 68416.m03083 protein kinase family protein contains ... 33 0.15
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 31 0.81
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 29 1.9
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 29 1.9
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 3.3
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont... 28 4.3
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 28 4.3
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 28 4.3
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 28 5.7
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 27 7.6
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 27 7.6
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 7.6
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 27 7.6
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 434 SPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRP 550
SP TT PP A PP P++P P+P + P
Sbjct: 17 SPPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPP 55
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 30.7 bits (66), Expect = 0.81
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 423 YEYATPNVPDNNKATSFVCSDFDLCVNPFRTSILSWIILS-KYFLG 289
YE A P V N + F DFD+ +NP ++ I KYFLG
Sbjct: 452 YEVAGPYVSSNPREALFNFRDFDIGINPSGLNVDEAKIYGYKYFLG 497
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 344 FTQRSKSEQTKLVALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPA 523
F QR ++ +VA GT ++ + + S + T+ PP +P ++Q P+ P P
Sbjct: 296 FKQRQWNQNPPMVANPRKGTEQISIAKKLDSVKPPQPTL--PPQLVEPSRVQSPSPPPPP 353
Query: 524 P 526
P
Sbjct: 354 P 354
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 167 P*IHSSYPK*TYIEPMTP-NLK*PPPNTMYNGIKPTRLWHLTP 292
P ++SS P TY P + K PPP +YN + P +++ P
Sbjct: 308 PYVYSSPPPPTYYSPSPRVDYKSPPPPYVYNSLPPPYVYNSPP 350
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 365 EQTKLVALLLSGTLGVAYSYGMFSPEKTLTTIVRPP-GACDPPKMQCPNTPAPAP 526
+ V LLL G L V+Y+ P K V+PP PPK P P
Sbjct: 7 QNISFVILLLLGLLAVSYACDCSDPPKPSPHPVKPPKHPAKPPKPPTVKPPTHTP 61
>At5g06940.1 68418.m00784 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 872
Score = 28.3 bits (60), Expect = 4.3
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Frame = +2
Query: 242 NTMYNGIKPTRLWHLTPRKYFDRMIQDKI--EVRNGFTQRSKSEQTKLVALLLSGT---- 403
N ++G P LW L PR R ++ +V + S EQ ++V SG
Sbjct: 326 NNGFSGEFPVVLWKL-PRIKIIRADNNRFTGQVPESVSLASALEQVEIVNNSFSGEIPHG 384
Query: 404 LGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPN 508
LG+ S FS + + PP CD P + N
Sbjct: 385 LGLVKSLYKFSASQNRFSGELPPNFCDSPVLSIVN 419
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 392 LSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPA 523
L+G + V S+ +F+P T + P A PP + P P+PA
Sbjct: 176 LTGDIPVNGSFSLFTPISFANTKLTPLPASPPPPIS-PTPPSPA 218
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 459 IVVSVFSGLNIPYEYATPNVPDNNKATSFVCSDFDLCVNPFRTS 328
I +F+GL + Y P DNN+ +C++ V P T+
Sbjct: 26 IAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTT 69
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 437 PEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCP 541
P T PP A P P + AP+P D P
Sbjct: 42 PAATPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAP 76
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 386 LLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAP 526
L+ + +L + S + S E + T+ P + PP TP+P P
Sbjct: 75 LVSAASLFLKPSVSLASEESSSATVTSPAESAAPPPPPATTTPSPPP 121
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +2
Query: 356 SKSEQTKLVALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKD 535
S+S+ + LLL G + V+Y+ P+ + P PPK P P K
Sbjct: 3 SRSQNLSFLVLLLLGFVAVSYACDCTPPKPSPAPHKPPKHPVKPPKPPAVKPPKPPAVKP 62
Query: 536 CPLRP 550
+P
Sbjct: 63 PTPKP 67
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 467 PPGACDPPKMQCPNTPAPAPDKDCPLRP 550
PP + PP + P+ P+P P L P
Sbjct: 153 PPESLPPPSPESPSPPSPEPPPPSSLEP 180
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 199 LYRTNDAKFKVATTKHNVQRYQTDPPMASHTEE 297
+++ ++ + +V KHN Y + P ASH +E
Sbjct: 7 IFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDE 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,511
Number of Sequences: 28952
Number of extensions: 307848
Number of successful extensions: 1059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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