Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i07
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             32   0.41 
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.9  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       29   3.8  
SB_52976| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.7  
SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 231 PGRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTNLYPQHIYPL 407
           PGR + T +  +      + L RSD+Q +  +LN+  P+    +      ++PQ +  L
Sbjct: 257 PGRMKPTSRATTEGAVTYLDLHRSDVQGLLGLLNDQDPIKFKWIKNRINQMWPQWLSAL 315


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 186 FSNGSNIRKFTKNQGPG-RPRKTGKIQSSREK 278
           FS+GSN+RK  +   PG +P K  ++   RE+
Sbjct: 154 FSSGSNLRKHVRKHKPGYKPYKDKRVHLPRER 185


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 324 MLNESRPVM--LTLMDPNRTNLYPQHIYPLNGSL 419
           +LN SRP+   +T+M P+R N  P H++   G +
Sbjct: 401 LLNISRPIRDNVTIMCPSRGNPSPHHLWTFGGKI 434


>SB_52976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 389 WIQISSVRIHKC*HYRPTLVKHVFNSLYIRS*QFNVIFFTRALYFS 252
           WIQ+  +R+  C  YRP     ++ SLY RS   N ++ + ALY S
Sbjct: 4   WIQVRVIRVRACDIYRP---NGLYRSLY-RS---NDLYHSNALYRS 42


>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +1

Query: 385 IHSTSIH*MDLSLKSI-TKKLQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPLFV 561
           ++S +I  M   ++++ T K++  H + ++  R + ++   M+++ FTA  ISI   L+ 
Sbjct: 73  VYSNTIQSMIAIIRAMGTLKIEFGHPDRADDAREMFALAGSMEDVKFTAELISIMKRLWS 132

Query: 562 KS 567
            S
Sbjct: 133 DS 134


>SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 489 FCPECHEKSVIYSFKNKHF*PFICEIVL 572
           FCP+C+   ++Y  K  HF   I  +++
Sbjct: 236 FCPDCYHLQIVYCSKLLHFSNSIANVLI 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,482,093
Number of Sequences: 59808
Number of extensions: 397102
Number of successful extensions: 1181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)