Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i07
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa...    33   0.25 
At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger) fa...    31   0.58 
At2g16520.1 68415.m01894 hypothetical protein                          30   1.8  
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic...    29   3.1  
At1g54260.1 68414.m06186 histone H1/H5 family protein contains P...    29   3.1  
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa...    29   4.1  
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa...    28   5.5  
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa...    28   5.5  
At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa...    28   7.2  
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At3g55690.1 68416.m06187 expressed protein predicted proteins, A...    27   9.5  
At3g45460.1 68416.m04909 hypothetical protein                          27   9.5  

>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 346

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +3

Query: 261 QSSREKDNIKLSRSDIQRIKNMLNESRPVMLT 356
           +S+ E+DNI +  +D+QR++  L  S P+++T
Sbjct: 97  RSTPEQDNIAMLMNDVQRMRQQLRYSNPILVT 128


>At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger)
           family protein contains Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 503

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 273 EKDNIKLSRSDIQRIKNMLNESRPVMLT 356
           E+DNI L   D+QRI+     S PV++T
Sbjct: 97  EQDNIALLMDDVQRIRKQFTSSIPVLMT 124



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 264 SSREKDNIKLSRSDIQRIKNMLNESRPVMLT 356
           +S  +DNI L   D+ RI+  L  S P++ T
Sbjct: 394 TSALEDNIALLMDDVHRIRKQLKSSNPILET 424


>At2g16520.1 68415.m01894 hypothetical protein
          Length = 99

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 261 QSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNR 374
           +S  +KD+I +   D+QRI+  L  S P+++T    N+
Sbjct: 34  RSVPDKDSIAMIMYDVQRIRQQLTSSTPLLVTGNQTNK 71


>At2g34470.1 68415.m04231 urease accessory protein (UREG) identical
           to urease accessory protein UREG GI:4324678 from
           [Arabidopsis thaliana]; contains Pfam profile: PF01495
           HypB/UreG nucleotide-binding domain
          Length = 275

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = -3

Query: 361 ISVNITGLLSLS-MF---LILCISDRDSLMLSFSRELCIFPVFL 242
           IS+N+  L  LS +F   L+LC S  D+L  +FSREL  + +++
Sbjct: 147 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYI 190


>At1g54260.1 68414.m06186 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 197

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +1

Query: 121 KILKRHKISFVTNK*VQAMWEHFQMALI*ENSQKIKGQEDQEKQEKYKALVKK 279
           K+L R+KIS + NK ++   E   M L   +++++   E  E++E+   LV++
Sbjct: 121 KVLDRYKISELENKVLEVAPEVVAMKLAESDNKRLIAAEAVEEEERMHKLVEE 173


>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam domain,
           PF01485: IBR domain
          Length = 543

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = +3

Query: 270 REKDNIKLSRSDIQRIKNMLNESRPVMLTLM 362
           +E+D +KL R DI+R+ ++L+ S+  ++ L+
Sbjct: 47  KEEDILKLQRDDIERVSSILSLSQVEVIVLL 77


>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 312

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 261 QSSREKDNIKLSRSDIQRIKNMLNESRPVML 353
           +S  E++NI +   D+QRI+  L  S PV++
Sbjct: 101 RSVSEQENILMLMDDVQRIRKRLTSSVPVLV 131


>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
           domain
          Length = 537

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 162 MSAGDVGTFSNGSNIRKFTKNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESR 341
           + +G+   +S+G N+            R        +E+D +KL R DI+++  +L+ S+
Sbjct: 29  IESGEEDLYSDGGNVSDDYNPVDDTISRSEKSYVVVKEEDILKLQRDDIEQVSTVLSVSQ 88

Query: 342 PVMLTLM 362
              + L+
Sbjct: 89  VESIVLL 95


>At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam
           PF03479: Domain of unknown function (DUF296); contains
           Pfam PF02178: AT hook motif;
          Length = 439

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 198 SNIRKFTKNQGPGRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRT 377
           +N+  F    GPG PR  G+ Q S E      S S + R  N  N +   +     P   
Sbjct: 363 ANMLSFGGVGGPGSPRSQGQ-QHSSESSEENESNSPLHRRSNNNNSNNHGIFGNSTPQPL 421

Query: 378 NLYPQHIY 401
           +  P  +Y
Sbjct: 422 HQIPMQMY 429


>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 398

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 264 SSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTNL 383
           S+ ++++I L   D+Q I+  L  S PVMLT    N++NL
Sbjct: 99  STPKQESIALLLRDVQGIRKYLTSSIPVMLT---QNQSNL 135


>At3g55690.1 68416.m06187 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 293

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +3

Query: 267 SREKDNIKL---SRSDIQRIKNMLNESRPVMLTLMDPNRTNLYPQHI 398
           SRE+D++K+   +  ++ +IK    +++P+     +PN    +PQ++
Sbjct: 121 SREEDSLKVLSAAAGEVAKIKKANFDAKPISYPNPNPNYLTSFPQNV 167


>At3g45460.1 68416.m04909 hypothetical protein
          Length = 315

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 273 EKDNIKLSRSDIQRIKNMLNESRPVMLT 356
           EK+NI L   D+Q I+  L  S PV +T
Sbjct: 119 EKENIALLMDDVQCIRRELTSSIPVTVT 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,444
Number of Sequences: 28952
Number of extensions: 282848
Number of successful extensions: 740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)