Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i06
         (315 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9600| Best HMM Match : DUF1596 (HMM E-Value=9.6)                    29   0.79 
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_9600| Best HMM Match : DUF1596 (HMM E-Value=9.6)
          Length = 205

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 99  RHCYSPTKPTHCG*LGCFRYFFLISLVFV 13
           RH + PT+PT  G +G  RY  LI +V +
Sbjct: 166 RHAFDPTRPTLAGLIG--RYLLLIFVVII 192


>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 74  GLVGL*QCLCSPIYFCRQITNSKIILRLLRCPWLSKNCS*N 196
           GL+ L   +C+P+ +  +    + +L+ L C W   N S N
Sbjct: 499 GLLALGSSVCNPVVYTLRYRRLRKVLKSLLCGWREANRSGN 539


>SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 92  QCLCSPIYFCRQITNSKIILRLLR 163
           Q +C P+YF R    S I  RL+R
Sbjct: 364 QNVCGPVYFVRPFRLSSIAYRLIR 387


>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 314  FFFNGECFLLQYSSEITI 261
            FF N  CF+  YSSE+ I
Sbjct: 1411 FFLNPSCFVRIYSSEVNI 1428


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 101  CSPIYFCRQITNSKIILRLLR 163
            C P+YF R    S I  RL+R
Sbjct: 2145 CGPVYFVRPFCLSSIAYRLIR 2165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,496
Number of Sequences: 59808
Number of extensions: 159755
Number of successful extensions: 331
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)