Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i06
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12820.1 68414.m01489 transport inhibitor response protein, p...    28   1.1  
At3g26810.1 68416.m03354 transport inhibitor response protein, p...    27   2.0  
At5g49980.1 68418.m06189 transport inhibitor response protein, p...    27   2.6  
At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase fa...    26   4.6  
At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    26   4.6  
At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1) (...    26   6.1  

>At1g12820.1 68414.m01489 transport inhibitor response protein,
           putative E3 ubiquitin ligase SCF complex F-box subunit;
           similar to transport inhibitor response 1 GI:2352492
           from [Arabidopsis thaliana]
          Length = 577

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 98  LCSPIYFCRQITNSKIILRLLRCP 169
           L S +YFC+Q+TN+ +I     CP
Sbjct: 371 LHSILYFCKQMTNAALIAVAKNCP 394


>At3g26810.1 68416.m03354 transport inhibitor response protein,
           putative E3 ubiquitin ligase SCF complex F-box subunit;
           similar to transport inhibitor response 1 GI:2352492
           from [Arabidopsis thaliana]
          Length = 575

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 98  LCSPIYFCRQITNSKIILRLLRCP 169
           L S +YFC+Q+TN+ ++     CP
Sbjct: 369 LHSILYFCQQMTNAALVTVAKNCP 392


>At5g49980.1 68418.m06189 transport inhibitor response protein,
           putative E3 ubiquitin ligase SCF complex F-box subunit;
           similar to F-box containing protein TIR1 GI:13249030
           from [Populus tremula x Populus tremuloides]
          Length = 619

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 104 SPIYFCRQITNSKIILRLLRCPWLS 178
           S +YFC+++TN+ +I     CP L+
Sbjct: 422 SILYFCQRMTNAAVIAMSENCPELT 446


>At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to
           desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
           GI:2352812; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 366

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 198 IFYEQFLDNQGHLNNLRI 145
           IF+E+ LD   HL+N+RI
Sbjct: 349 IFFEKGLDGTSHLSNIRI 366


>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 234 QLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFVIWRQKYIGE 103
           Q  VFS + H   + +       + +N R I +  +W QK++G+
Sbjct: 105 QFYVFSNHVHKDTYVQAMEKESANDHNDRAIRVATLWYQKHLGD 148


>At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1)
           (FBL1) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to transport inhibitor response 1 GI:2352492
           from [Arabidopsis thaliana]
          Length = 594

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 104 SPIYFCRQITNSKII 148
           S +YFCRQ+TN+ +I
Sbjct: 376 SVLYFCRQMTNAALI 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,491,279
Number of Sequences: 28952
Number of extensions: 112330
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)