Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i01
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    32   0.083
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.25 
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    29   0.58 
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    27   2.4  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   2.4  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   4.1  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   5.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   7.2  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   7.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   7.2  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    25   9.5  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   9.5  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +3

Query: 108 NVFHVEHHSRVPEYHLVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAP 287
           +V ++E +  V   HLV +       ++P S PA+   +   +TP + T    + G   P
Sbjct: 183 HVGYLEMYQYVIARHLVAICKQYNLIHLPRSLPADVIESAKSETPAMNTN--IEQGVTQP 240

Query: 288 SLLNDEMF-----VEAKKRIEDVDIMGDPNSTVSVDFKVQS 395
           SL+N E       + + K  +  +I  D N+  +VD K  S
Sbjct: 241 SLVNTEQLSHQQSISSTKSSKLDEISADNNAQSAVDNKYSS 281


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +3

Query: 315 EAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGR 494
           E  ++ E+       +S+ S      SSE GDS+S SD E  + S+++   K +  +  R
Sbjct: 189 EVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEER 248

Query: 495 QLKLVLKKQE 524
             K+    Q+
Sbjct: 249 PAKITKPSQD 258


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +3

Query: 243 HLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESL 422
           H  + KVT+   K             ++  E+   + + + + +    + + EF ++E+L
Sbjct: 19  HNSSHKVTENAKKRKHSKEKPQNSRKRQLAEEKKSLFENSDSENEKDLIDADEFEEAETL 78

Query: 423 SDKEHSAESQEDGVHKIDLEA 485
           SD EH  E Q      ID EA
Sbjct: 79  SDLEHDEEPQTFADEFIDDEA 99


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 75  IHEHMTIDELRNVFHVEHHSRV 140
           ++ HMT+DE +N+F  E   RV
Sbjct: 162 LNSHMTVDEFKNIFFWEWFHRV 183


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 384 KVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKKQEGLIKKDGLKVWK 560
           KVQ S+FG+S    D +     ++D   KID       ++ V+ +Q  ++    LK ++
Sbjct: 365 KVQQSQFGESAYDEDMDRRMNPEDD--RKIDYYNVAHNIREVVTEQPSILVGGKLKEYQ 421


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 23/84 (27%), Positives = 31/84 (36%)
 Frame = +3

Query: 207 ANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPNSTVSVDFK 386
           A+S+S  SG          +    ++ S  ND     +    E      D +S+ S    
Sbjct: 96  AHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 155

Query: 387 VQSSEFGDSESLSDKEHSAESQED 458
             SSE  DS S S    S  S ED
Sbjct: 156 ESSSEGSDSSSSSSSSESESSSED 179



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 354 DPNSTVSVDFKVQSS-EFGDSESLSDKEHSAESQEDGVHKIDLEAFG 491
           D +S+ S D + +SS E  DS S S    S+ S EDG    D    G
Sbjct: 281 DDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSG 327


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
 Frame = +3

Query: 126 HHSRVPEYHLVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLND- 302
           H+  VPE   +QL    A+ N  T       +A++ +   +   KVT+   +  SLL++ 
Sbjct: 292 HNFSVPEIR-IQLPGD-AKENKETRTSVEITAAENAQAA-VTLRKVTR---QLGSLLHEL 345

Query: 303 EMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKID 476
           E F++  +  ++      P+S +S+D   +   +   +  S         E G H  D
Sbjct: 346 ECFIQHHEYTKERTAQSSPSSRMSMDSNFEQHWYDAEDYESTTSQLNHYSESGAHAAD 403


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 210  NSNSADSGKTPHLKTEKVT 266
            N N  DS KTPH + +K+T
Sbjct: 947  NDNLIDSIKTPHTELQKIT 965


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 157 FSSHITWPEGIYPLLTQRTRTAPIQE 234
           F+ H  W    YP   + TRT P  E
Sbjct: 746 FTKHNNWEASTYPSAPKNTRTYPTAE 771


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 453  EDGVHKIDLEAFGRQ--LKLVLKKQEGLIKKDGLKVWKALK 569
            E+  ++ +L  FG Q  LKLVL   +   +K+  K+W++++
Sbjct: 2205 EEATNEWELNYFGLQSWLKLVLADPKKSCEKEFSKIWESMR 2245


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +3

Query: 297 NDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKID 476
           +DE+ +E  K       +GD     S D K  +   G S S   ++   + +  G   I 
Sbjct: 129 HDEVLMEMYKEKRLQINVGDGRMGTSEDEKFDAIHVGASASELPQKLVDQLKSPGKILIP 188

Query: 477 LEAFGRQLKLVLKKQEGLIKK 539
           +  + + + L+ K ++G I K
Sbjct: 189 IGTYSQNIYLIEKNEQGKISK 209


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 192 PTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEM 308
           PT+ P   N   S  TP+L + K T   YKA + L +++
Sbjct: 191 PTT-PWRRNGFRSKTTPNLNSGKETPSSYKASARLMEQL 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,074
Number of Sequences: 5004
Number of extensions: 59376
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)