Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i01
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)                 36   0.050
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)                    32   0.47 
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)               31   0.82 
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)                       30   2.5  
SB_19065| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   2.5  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 29   5.8  
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)             28   7.6  
SB_33238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_45073| Best HMM Match : ERM (HMM E-Value=0)                         28   7.6  

>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
          Length = 603

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +3

Query: 210 NSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIED---VDIMGDPNSTVSVD 380
           + NS    K    + +K  K   KA    +DE    ++    D   VD M D +S+   +
Sbjct: 262 DDNSVKKEKKTGQQNKKKGKSASKAKKNSDDESEASSEDGYIDSKEVDYMSDTSSSSEEE 321

Query: 381 FKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKKQEG 527
             V++ +    + L+ +   +ES+ED     +L   GR +K +L+K +G
Sbjct: 322 VNVETPKPDAQDDLNAETSESESEEDA----ELTNAGRDIKKMLEKDQG 366


>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
          Length = 752

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 30/148 (20%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
 Frame = +3

Query: 210 NSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIED-----VDIMGDPNSTVS 374
           + N ++  +  + K  + TK G  A + L+     + KKR  D     V+   D +++  
Sbjct: 423 HENESEKAEDKNEKPAEPTKEGVPAEAKLSKPRLSKFKKRKADKEHEKVEKKEDKDTSKP 482

Query: 375 VDFKVQSS----EFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKKQEGLIKKD 542
           +  K++      E  D E+  ++    ++++DG  + D E   +  ++  KK++ ++ +D
Sbjct: 483 LFGKLRKKAGDKETNDGEAKQEEATEIKNEKDGSKEDDKEEEEKSEQIRDKKEDAVVNED 542

Query: 543 GLKVWKALKNETQPHGVDYEEMITVSHS 626
             ++ K  + ETQ      E++ T+  +
Sbjct: 543 KQELEKQQQAETQATPEKAEKLETLDEN 570


>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
          Length = 684

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +3

Query: 141 PEYHLVQLTHHLAR---RNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMF 311
           PEY + Q+  HLA    +     HP++      G+    K +K  + G   P  L DE+ 
Sbjct: 415 PEYSVAQMVSHLAEPEEKKKAKKHPSDHAGPALGEPKKKKKKK--EPGPSNP--LGDEVI 470

Query: 312 VEAKKRIEDVDIMGDPNSTVSVD 380
            + KK+ +D D   D + T  V+
Sbjct: 471 KKKKKKHKDKDKTKDKHKTKKVE 493


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
 Frame = +3

Query: 303  EMFVEAKKRIEDVDIMGDPNSTVSVDFK---VQSSEFGDSESLSDKEHSAESQEDGVHKI 473
            E  VE    +   D+ G  + TV++ F+   ++ SE G+S S+SD+   A++Q++ V  +
Sbjct: 2313 EAAVEDDSNVAYDDVTGGDDVTVNIYFQEGMMEISEDGESVSVSDRVDGADNQKEWVPCV 2372

Query: 474  DLEAFGRQLKLVLKKQEGLIKK 539
              E  G  ++ +L + +  +K+
Sbjct: 2373 -AEFAGAFVENLLNRSKAKLKE 2393


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 75  IHEHMTIDELRNVFHVEHHSRVPEYHL 155
           +H HM+  +L  VF V+ H  VPEY +
Sbjct: 544 VHRHMSKRDLAAVFGVDSHDDVPEYDI 570


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +3

Query: 294 LNDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKI 473
           L +   +  KK +E ++++   N ++    +V   +  D+E LS+ +   E QED   ++
Sbjct: 742 LKEFRLLSEKKELERLEVLRQENESLKQALEV---DMIDAEVLSEADDVQEDQEDNEDEV 798

Query: 474 DLE 482
           D+E
Sbjct: 799 DVE 801


>SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)
          Length = 893

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
 Frame = +3

Query: 168 HHLARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFV------EAKKR 329
           H ++R +IPT+  A+   AD     H++         KA  L   +  V      EA + 
Sbjct: 114 HFMSRHDIPTAKFASFTDADKA-CEHIRKADYAALVVKASGLAAGKGVVVASDKDEAIRA 172

Query: 330 IEDV---DIMGDPNSTVSVDFKVQSSEF 404
           + D+   +I GD  ST+ ++ K++  EF
Sbjct: 173 VHDMLKDNIFGDAGSTIVIEEKLEGEEF 200


>SB_19065| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 531

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +3

Query: 243 HLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESL 422
           H+K    + G  + PS    + F+E    + D   M +P STV+V      ++   +E+L
Sbjct: 294 HMKVHSKSGGRTRTPS---KKRFMEDDAEMIDSSSMTEPESTVNVSHLGSEADVQLAEAL 350

Query: 423 ---SDKEHSAESQEDGVHKIDLEAFGRQ 497
              S+    AE   D  H + +E  G +
Sbjct: 351 VAVSESVIGAEGGMDTAHVVAVETTGHE 378


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 306 MFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLE 482
           +F EA   I+D+DI   P   V+        +     +L + EH+ E Q     + D+E
Sbjct: 596 LFDEADDVIDDLDISAPPRIQVNGQLLELGEDSKGQHALDEGEHNLEYQGSEQERFDIE 654


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +3

Query: 189 IPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAK---KRIEDVDIMGDP 359
           IP     + +S+D        T+K TKG        +DE  V+ K   K+    D   D 
Sbjct: 11  IPQDAIDDDSSSDEEVKVKKDTKKATKGSSSEDDSSSDEEEVKPKKDAKKAATEDSSSDD 70

Query: 360 NSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKID 476
           +S+   + KV+      ++  S ++ S+  +E+   K D
Sbjct: 71  DSSSDEEVKVKKDTKKATKGSSSEDDSSSDEEEVKPKKD 109


>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 456 DGVH-KIDLEAFGRQLKLVLKKQEGLIKKDGLKVWKALKNETQPHGVDYEEMI 611
           DG H ++  EAFGR+ ++ L++  G+   D +     L  +  P  +D   M+
Sbjct: 50  DGSHYELSFEAFGRERRIRLRRNTGVFTSDAV----ILNGDGTPLDIDMNSMV 98


>SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)
          Length = 315

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +3

Query: 135 RVPEYHLVQLTHHL---ARRNIP---TSHPANSNSADSGKTPHLKTEKVTKGGYKAPS 290
           ++PE  L+ L+      ++R+ P   T HP   N+    K      EK +KGG+++PS
Sbjct: 4   QLPETDLIDLSDDKDADSQRSSPVILTKHPNKHNTGKGRKGEEKVQEKGSKGGHESPS 61


>SB_33238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 330 IEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDL 479
           I+DVD++ D +S V  D  V + +  DS+ + D +   +   D +  +D+
Sbjct: 43  IDDVDVIDDDDSDVINDVDVNNDD--DSDVIDDADVIDDDDSDRIDDVDV 90


>SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 122 RAPQQSTRVPPGSAHTSLGQKEYTHF-SPSELEQRRFRKDPPFKNRKS 262
           R P+ ++R P  ++ TS G+ E+ +  +  +LE    R D P  N K+
Sbjct: 199 RTPEWTSRTPEWTSRTSNGKPEHPNVRAEHQLENPNTRMDIPITNWKT 246


>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
          Length = 504

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
 Frame = +3

Query: 309 FVEAKKRIEDVDIMGDPNSTV---SVDFKVQSSEFGD-SESLSDKEHSAESQEDGVHKID 476
           F++ K+ I   D+   P +TV   S   + +  E+ D S +L   E     +    H + 
Sbjct: 43  FLQIKEAIFTSDVFCPPETTVLLASYMCQAKHGEYTDESAALIKDEKLLPDRVLDQHTLS 102

Query: 477 LEAFGRQLKLVLKKQEGLIKKDGLKVWKALKNETQPHGVDYEEMITVSHS 626
            E +  ++ L  K+   + K+D +  +  +  + + +GV+Y ++    H+
Sbjct: 103 KEQWDERIILWWKEHGRMAKEDAVIEYLKITQDLEMYGVNYFQIKNKKHT 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,936,631
Number of Sequences: 59808
Number of extensions: 423540
Number of successful extensions: 1268
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)