Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10i01
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 38 0.011
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 38 0.011
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 29 5.1
Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical pr... 28 6.7
AC024826-5|AAF60800.1| 152|Caenorhabditis elegans Hypothetical ... 28 6.7
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 28 8.9
U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical p... 28 8.9
U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical p... 28 8.9
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 28 8.9
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 75 IHEHMTIDELRNVFHVEHHSRVPEYHLVQLTHH 173
+H H+ +EL+ VF V + VPEY L++ T H
Sbjct: 22 VHHHLNEEELKQVFGVSNKHDVPEYSLIEATRH 54
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 75 IHEHMTIDELRNVFHVEHHSRVPEYHLVQLTHH 173
+H H+ +EL+ VF V + VPEY L++ T H
Sbjct: 22 VHHHLNEEELKQVFGVSNKHDVPEYSLIEATRH 54
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 75 IHEHMTIDELRNVFHVEHHSRVPEYHLVQLTHH 173
+H H+ +EL+ VF V + VPEY L++ T H
Sbjct: 22 VHHHLNEEELKQVFGVSNKHDVPEYSLIEATRH 54
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/93 (26%), Positives = 43/93 (46%)
Frame = +3
Query: 297 NDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKID 476
NDE+ + +++EDV ++ D + FK +EF + S S+K E + + +
Sbjct: 109 NDELRMADVEKVEDVKMIRDLKAGKRPPFK---TEFKNLISRSEKFRRIE-----IARAE 160
Query: 477 LEAFGRQLKLVLKKQEGLIKKDGLKVWKALKNE 575
L+ G + + G + K GL WK K E
Sbjct: 161 LQRCGGESSEFYRLLLGRLSKLGLLKWKMSKRE 193
>Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical
protein T15H9.5 protein.
Length = 173
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/103 (22%), Positives = 47/103 (45%)
Frame = +3
Query: 177 ARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGD 356
++ +I SH N + K+ + V+ K+P + E +++KK+ ED +
Sbjct: 37 SQMSIDESHSKNQKLPSAEKSVEECKKPVSPEKKKSPIKVLSEKKLKSKKKEED----KE 92
Query: 357 PNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEA 485
P+ V D K + + + + + + + QE+ K DLE+
Sbjct: 93 PDEKVEKDVKKEVKADNNEPLVKNLKIAKKEQEEENPKTDLES 135
>AC024826-5|AAF60800.1| 152|Caenorhabditis elegans Hypothetical
protein Y55F3AM.8 protein.
Length = 152
Score = 28.3 bits (60), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 154 RWYSGTLLWCSTWKTFRSS 98
RWY ++W STW ++ S
Sbjct: 45 RWYKRDIVWLSTWNLYKCS 63
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 153 LVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKV 263
L++L H A P PAN + A + TPH T V
Sbjct: 2 LIELFSHSAPPEDPYYVPANESFATTALTPHFSTTSV 38
>U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical
protein F42G9.1b protein.
Length = 469
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 315 EAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQED 458
EAKK + D P+S+ VD V + E + E SDKE A+ +ED
Sbjct: 214 EAKKSKSETDAETAPSSSSGVD-GVATEE--EDEDDSDKEFVADEEED 258
>U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical
protein F42G9.1a protein.
Length = 491
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 315 EAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQED 458
EAKK + D P+S+ VD V + E + E SDKE A+ +ED
Sbjct: 236 EAKKSKSETDAETAPSSSSGVD-GVATEE--EDEDDSDKEFVADEEED 280
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 153 LVQLTHHLARRNIPTSHPANSNSADSGKTPHLKTEKV 263
L++L H A P PAN + A + TPH T V
Sbjct: 2 LIELFSHSAPPEDPYYVPANESFATTALTPHFSTTSV 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,946
Number of Sequences: 27780
Number of extensions: 337769
Number of successful extensions: 1121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -