Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i01
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   1.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   1.1  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   1.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   7.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 279 KAPSLLNDEMFVEAKKRIE-DVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQE 455
           K+PSL +   ++   + I   + +    +  + VD++ +  EFGDS+    +    E   
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEFDEFGDSKCSLCQRRFEEQGN 286

Query: 456 DGVHKIDL 479
               K+DL
Sbjct: 287 YSCLKVDL 294


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 375 VDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLVLKK 518
           V+ +++ S+ G S ++S      + +   VH + +     QLK ++KK
Sbjct: 428 VEHRIRHSQIGISRAMSALRILEKHELANVHPVGINPGKMQLKNIIKK 475


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 147 YHLVQLTHHLARRNIPT 197
           YH+ QL HHL+  N+PT
Sbjct: 5   YHVAQLPHHLS-PNMPT 20


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 193 PLLTQRTRTAPIQERPPI*KPKKSLKVGTRPPLCSMTRC 309
           P+ T+R  T   +ER P   PK+  K+ + P L     C
Sbjct: 622 PVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISC 660


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 227 FRKDPPFKNRKSH*RWVQGPLFAQ 298
           F   PP      +  WV GPLF Q
Sbjct: 103 FCMSPPMVINCYYETWVLGPLFCQ 126


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 227 FRKDPPFKNRKSH*RWVQGPLFAQ 298
           F   PP      +  WV GPLF Q
Sbjct: 69  FCMSPPMVINCYYETWVLGPLFCQ 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,422
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)