Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10i01
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01810.1 68416.m00123 expressed protein                             32   0.38 
At4g28080.1 68417.m04027 expressed protein                             30   1.5  
At4g12290.1 68417.m01947 copper amine oxidase, putative similar ...    30   2.0  
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc...    30   2.0  
At4g17890.1 68417.m02666 human Rev interacting-like family prote...    29   3.6  
At3g02400.1 68416.m00227 forkhead-associated domain-containing p...    29   4.7  
At2g26860.2 68415.m03223 F-box family protein contains F-box dom...    29   4.7  
At5g49150.1 68418.m06083 hypothetical protein                          28   6.2  
At4g19640.1 68417.m02884 Ras-related GTP-binding protein, putati...    28   6.2  
At3g19800.1 68416.m02508 expressed protein                             28   6.2  
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin...    28   6.2  
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1...    28   8.3  
At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-contain...    28   8.3  
At3g55760.2 68416.m06196 expressed protein                             28   8.3  
At3g55760.1 68416.m06195 expressed protein                             28   8.3  

>At3g01810.1 68416.m00123 expressed protein
          Length = 921

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 195 TSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAK-KRIEDVDIMGDPNSTV 371
           T  P +   A S     LK E    GG    +L+N+E + EA+   I D DI    +S++
Sbjct: 158 TIQPVSRRRASSSSMNSLKDE-AKNGGESVSALMNEEYYKEAEIASITDDDI--SSHSSL 214

Query: 372 SVDFKVQSSEFGDSESLSDKEH 437
           +V      S  G S    ++EH
Sbjct: 215 TVSSSTLESNGGFSVRTEEEEH 236


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 378  DFKVQSSEFGDSESLSDKEHSAE--SQEDGVHKIDLEAFGRQLKLVLKKQEGLIKKD 542
            D ++ S      ES SDKE+ +E  S+E  V   DLE    Q +L L K E  + +D
Sbjct: 1026 DDEILSPAHLTGESSSDKENKSETKSEEKKVENFDLEQSKPQDQLKLVKPEATVHED 1082


>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 566

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 336 DVDIMGDPNSTVSVDFKVQSSEFGDS---ESLSDKEHSAESQEDGVHKIDL 479
           D+D+ G  NS V V+ K Q +E G+S     L    + A++++DG  K+ L
Sbjct: 362 DLDVDGPDNSFVKVNLKRQETEPGESPRKSYLKAVRNIAKTEKDGQIKLSL 412


>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 317

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +3

Query: 174 LARRNIPTSHPANSNSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMG 353
           L+RRN+  S      +  +  TP L   K        P+L N E  +  KK   DV I G
Sbjct: 43  LSRRNLSKSSLLLLLTTQTTLTPLLDFSKAQADTIANPNLTNCENRIPTKKAFIDVSIDG 102

Query: 354 DP 359
           +P
Sbjct: 103 EP 104


>At4g17890.1 68417.m02666 human Rev interacting-like family protein
           / hRIP family protein contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 413

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 324 KRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLK 503
           K I      GD N    ++ K    +F  S S+S  +     Q+D    ID+ A     +
Sbjct: 317 KSISSAQYFGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDS--NIDITASDLINR 374

Query: 504 LVLKKQEGL 530
           L  + Q+ L
Sbjct: 375 LSFQAQQDL 383


>At3g02400.1 68416.m00227 forkhead-associated domain-containing
           protein / FHA domain-containing protein / AT hook
           motif-containing protein contains Pfam profiles PF00498:
           FHA domain, PF02178: AT hook motif
          Length = 585

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
 Frame = +3

Query: 216 NSADSGKTPHLKTEKVTKGGYKAPSLLNDEMFVEAKKRIEDVDIMGDPNSTVSV-DFKVQ 392
           NS D  +    + EK  + G    S    E      KR+E V+I     STV   D    
Sbjct: 421 NSQDIERERENENEKEAQEGCSERSDKEYERVGGGAKRVEQVEIELRKKSTVGEDDLNCT 480

Query: 393 SSEFGDSESLSDKE---HSAES----QEDGVHKIDLEAFGRQL-KLVLKKQEGLIKKDGL 548
             E G++E+L + E   H  ES    +E G   +D E  G+      +++ E  ++K  L
Sbjct: 481 VREDGETENLQEIEEECHDEESDCKVEEAGFATLDEEKVGQGWNNKKVERVEVYLEKMKL 540

Query: 549 KVW 557
           + W
Sbjct: 541 REW 543


>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 355

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 143 WYSAVVLDMEDVPKLIYCHVLVDI-FFLGFHFRSIIVLDYGSGTKI 9
           W   +V  +ED PKL    ++VD+ FF+G + +++++L     TKI
Sbjct: 311 WSKLLVRLLEDSPKLRVLKIVVDVSFFIG-NLKALVLLIISFLTKI 355


>At5g49150.1 68418.m06083 hypothetical protein
          Length = 896

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 784 ICQAFYFLHVKQCPIDVKLYFNKY 713
           +C +F   H++ CP DV +Y N Y
Sbjct: 438 MCISFDNKHIQPCPFDVNVYSNGY 461


>At4g19640.1 68417.m02884 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein RAB5A GI:1370178 from
           [Lotus japonicus]
          Length = 200

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/63 (22%), Positives = 33/63 (52%)
 Frame = +3

Query: 297 NDEMFVEAKKRIEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKID 476
           N   F  AKK ++++   G+PN  +++      S+  D+  ++ ++    +QE+G+  ++
Sbjct: 94  NQASFERAKKWVQELQAQGNPNMVMAL--AGNKSDLLDARKVTAEDAQTYAQENGLFFME 151

Query: 477 LEA 485
             A
Sbjct: 152 TSA 154


>At3g19800.1 68416.m02508 expressed protein
          Length = 229

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
 Frame = +3

Query: 165 THHLARRNIPTSHPANS------NSADSGKT-PHLKTEKVTKGGYKAPSLLNDEMFVEAK 323
           THHL   ++   H A+S      N   S KT   L T   ++G +        ++ +   
Sbjct: 22  THHLPFSSLSKKHQASSPIQAAINGGGSSKTVKRLITLSPSEGKWNGNWKTQYDVSLR-D 80

Query: 324 KRIEDVDIMGDPNSTVSVDFKVQ 392
            +++D+   G PNS VSVD  VQ
Sbjct: 81  LQLQDLVEDGPPNSRVSVDLSVQ 103


>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 287

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +3

Query: 330 IEDVDIMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLKLV 509
           IE   ++      V    ++ SS+  + +   +++   + +ED   K D +    + K  
Sbjct: 158 IESAKLLAYIKKKVHKHAEIISSKTEEEKKKEEEDKKKKEEEDKKKKEDEKKKEEEKKKE 217

Query: 510 L--KKQEGLIKKDGLKVWKALKNETQPHGVDYEEMITV 617
              KK+EG  KK+ +KV    K  TQ   V+Y+E++ V
Sbjct: 218 EENKKKEGEKKKEEVKVEVTTKTITQV--VEYKEIVKV 253


>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
           plant glutamate receptor family, PMID:11379626
          Length = 860

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 252 FLNG-GSFLNRRCSSSLGEKWVYSFWPSDV*AEPGGTLVL 136
           FLN  GSF NRR  SS   K     WP      P GT ++
Sbjct: 394 FLNSNGSFSNRRHLSSTHNKLETIIWPGGSAQSPKGTSLI 433


>At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           weak similarity to SP|P79245 Steroidogenic acute
           regulatory protein, mitochondrial precursor (StAR) {Ovis
           aries}; contains Pfam profiles PF01852: START domain,
           PF00169: PH domain
          Length = 719

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 345 IMGDPNSTVSVDFKVQSSEFGDSESLSDKEHSAESQEDGVHKIDLEAFGRQLK 503
           ++ D +S    +F++  SE     S  D+E  A+  E+    IDL  F   L+
Sbjct: 440 VLMDEDSDDDDEFQIPDSEPEPETSKQDQETDAKKTEEPALNIDLSCFSGNLR 492


>At3g55760.2 68416.m06196 expressed protein
          Length = 578

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 423 SDKEHSAESQEDGVHKIDLEAFGRQLKLVLKKQEGLIKKDGLKVWKALKNETQPHGV 593
           S +  S E   D +   + E   R L  + +     + +DGLK WK    E +P GV
Sbjct: 276 SSETLSTEHDLDLISSANAEEVARVLDSLDESSTHGVSEDGLKWWKQTGVEKRPDGV 332


>At3g55760.1 68416.m06195 expressed protein
          Length = 578

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 423 SDKEHSAESQEDGVHKIDLEAFGRQLKLVLKKQEGLIKKDGLKVWKALKNETQPHGV 593
           S +  S E   D +   + E   R L  + +     + +DGLK WK    E +P GV
Sbjct: 276 SSETLSTEHDLDLISSANAEEVARVLDSLDESSTHGVSEDGLKWWKQTGVEKRPDGV 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,481
Number of Sequences: 28952
Number of extensions: 316498
Number of successful extensions: 1051
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)