Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h24
         (536 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YWW7 Cluster: Calcium/calmodulin-dependent protein ki...    34   2.4  
UniRef50_A4XIA4 Cluster: DNA polymerase III, delta subunit; n=1;...    33   5.5  
UniRef50_P36520 Cluster: 54S ribosomal protein L10, mitochondria...    33   5.5  
UniRef50_UPI000155F903 Cluster: PREDICTED: similar to hCG2042446...    32   7.3  
UniRef50_A2QDM8 Cluster: Remark: the ORF is longer than the StrI...    32   7.3  
UniRef50_Q9PQP2 Cluster: 50S ribosomal protein L15; n=1; Ureapla...    32   7.3  
UniRef50_Q0AQM4 Cluster: Methylmalonyl-CoA mutase; n=1; Maricaul...    32   9.6  

>UniRef50_Q4YWW7 Cluster: Calcium/calmodulin-dependent protein
           kinase, putative; n=4; Plasmodium (Vinckeia)|Rep:
           Calcium/calmodulin-dependent protein kinase, putative -
           Plasmodium berghei
          Length = 458

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 342 FPKCSSKTTRIFNYNIISRIKIFNSLVKVLSPHMDRDRN 458
           + KC  K T  F  N IS  KI+NS++  +SP +  D+N
Sbjct: 97  YKKCEEKNTFPFKSNYIS--KIYNSVINQVSPEITHDKN 133


>UniRef50_A4XIA4 Cluster: DNA polymerase III, delta subunit; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep: DNA
           polymerase III, delta subunit - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 334

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = -2

Query: 433 DNTFTKLLKIFIREIML*LNILVVLEEHLGKVRRPAHQVVLQ 308
           +N   +++  + +++ML  N L VL  +LGK  RPAH+ +L+
Sbjct: 166 ENMAQEIIMHYNKDMMLIYNYLQVLISYLGKKSRPAHEDILK 207


>UniRef50_P36520 Cluster: 54S ribosomal protein L10, mitochondrial
           precursor; n=7; cellular organisms|Rep: 54S ribosomal
           protein L10, mitochondrial precursor - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 322

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 371 SSGLGRTFGEGEEAGSS-GRLASAFDDGSEPIY 276
           SSGLG+T G G++   + G++ S F+ G  PIY
Sbjct: 82  SSGLGKTSGRGQKGQKARGKVKSWFEGGQTPIY 114


>UniRef50_UPI000155F903 Cluster: PREDICTED: similar to hCG2042446;
           n=1; Equus caballus|Rep: PREDICTED: similar to
           hCG2042446 - Equus caballus
          Length = 214

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -2

Query: 388 ML*LNILVVLEEHLGKVRRPAHQVVLQAPLTTAASQFTRILRFSSVHDPFALCTLLT 218
           +L L IL + + HLG V+ P  Q+ L +PL            F+ VH PF+LC  LT
Sbjct: 33  VLLLTILAIKKCHLGYVKLPQWQLSLLSPL------------FTEVHFPFSLCMTLT 77


>UniRef50_A2QDM8 Cluster: Remark: the ORF is longer than the
           StrI-related protein of D. radiodurans; n=4;
           Pezizomycotina|Rep: Remark: the ORF is longer than the
           StrI-related protein of D. radiodurans - Aspergillus
           niger
          Length = 535

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 313 RRPDEPASSPSPNVLPRPLEYLII 384
           + P  PASSP P   PRPL +L+I
Sbjct: 2   KEPVIPASSPPPPAFPRPLRFLVI 25


>UniRef50_Q9PQP2 Cluster: 50S ribosomal protein L15; n=1; Ureaplasma
           parvum|Rep: 50S ribosomal protein L15 - Ureaplasma
           parvum (Ureaplasma urealyticum biotype 1)
          Length = 148

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 374 YSSGLGRTFG---EGEEAGSSGRLASAFDDGSEPIY 276
           + SGLG+T G   +G++A  SG +  AF+ G  P+Y
Sbjct: 24  HGSGLGKTSGRGQDGQKARKSGMVRLAFEGGQTPLY 59


>UniRef50_Q0AQM4 Cluster: Methylmalonyl-CoA mutase; n=1; Maricaulis
           maris MCS10|Rep: Methylmalonyl-CoA mutase - Maricaulis
           maris (strain MCS10)
          Length = 480

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 403 FIREIML*LNILVVLEEHLGKVRRPA-----HQVVLQAPLTTAASQFTRILRFSSVHDPF 239
           F R +   L+IL+  E HLGKV  PA     H+ +  +   +A S F  I R   + D F
Sbjct: 347 FARRVARNLHILLAEESHLGKVTDPAAGSYLHETLADSLAQSAWSLFQEIERRGGLVDAF 406

Query: 238 A 236
           A
Sbjct: 407 A 407


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,868,833
Number of Sequences: 1657284
Number of extensions: 8479799
Number of successful extensions: 24116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24078
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)