Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h23
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   1.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   1.7  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   5.2  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   9.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   9.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.0  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 286  FEVT-LSPFPSDAPLTSMDVERALSFAPRRGTAAFKSSG 399
            FEV  LS FPSD   T   +ER+     R GTA F+S+G
Sbjct: 1371 FEVNGLSHFPSDIEDT---IERSHPRIARGGTAVFQSAG 1406


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -2

Query: 452 KRPVADIPQHPNHDSEQPPELLKAAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRS 273
           +RP + +  +  ++  QP   ++ +V       N RS+S+L    S  +  S TSN +  
Sbjct: 748 QRPSSSMSLYGEYNKSQPQLSMQRSVSPNPLGPNRRSSSVL---QSQKSTSSNTSNRNNG 804

Query: 272 SYSG 261
            YSG
Sbjct: 805 GYSG 808


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 395 ELLKAAVPRRGAKLNARSTSILVR 324
           E+LKAAV + G    AR +S+LVR
Sbjct: 15  EILKAAVSKYGKNQWARISSLLVR 38


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 509 SVYLTRKTKNTVRTASYNIKRPVADIPQHPNHDSEQPP 396
           S+ LTRK +NT R+    +  PV  +  +   +S  PP
Sbjct: 228 SIMLTRKLENTTRSDQGYLASPVPFLNGNEPANSGLPP 265


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 41  SSGTSSIPKFHSSLQDLKQPSLQEPR 118
           S  T+S  K H S   LK+ S  EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -2

Query: 488 TKNTVRTASYNI----KRPVADIPQHPNHDSE 405
           T ++ R +SY++    K P+A+ P H N D+E
Sbjct: 301 TLHSGRQSSYHMPESPKTPIAESPDHDNWDNE 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,251
Number of Sequences: 5004
Number of extensions: 33445
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)