Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h23
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31370.1 68414.m03839 expressed protein ; expression supporte...    29   1.4  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   4.4  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    28   4.4  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    27   5.8  
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ...    27   5.8  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    27   5.8  
At1g20490.1 68414.m02553 AMP-dependent synthetase and ligase fam...    27   5.8  
At3g21440.1 68416.m02705 myb family transcription factor contain...    27   7.7  
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s...    27   7.7  

>At1g31370.1 68414.m03839 expressed protein ; expression supported
           by MPSS
          Length = 193

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 484 KTPFEQRVTILSGRSPTFPNIRTTTANSLQSS*RPRCH 371
           K+ FE+   I S   P  P++RTT+ NSL S     CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 56  SIPKFHSSLQDLKQPSLQEPRCLATRV 136
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 342 RARVELRSASWHRGLQELWRLFAVVVRMLGNV 437
           RAR+ L  A    G + +W   A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 262 VWRLTDHFTTASNGSDSSSRGTEYSTT 182
           +W + DH T A  GSDS S G+ +  T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259


>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
           putative nearly identical to 67kD chloroplastic
           RNA-binding protein, P67 [Arabidopsis thaliana]
           GI:9755842
          Length = 688

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +3

Query: 327 DEYGRRARVELRSASWHRGLQELWRL----FAVVVRMLGNVG--DRPLNI 458
           D YGR   V++  + + R   E WR+    F+ ++R+ G  G  D  LNI
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNI 288


>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 267 IRTAMGV*SHAVSVPERRSSDEYGRRARVELRSASWHRGLQELWRLFA 410
           +RT +   + AVS+ +RR++DE    +R+   S+S+  G + L   FA
Sbjct: 318 LRTMLVSCAQAVSINDRRTADEL--LSRIRQHSSSYGDGTERLAHYFA 363


>At1g20490.1 68414.m02553 AMP-dependent synthetase and ligase family
           protein similar to SP|Q42524 and SP|Q9S725; contains
           Pfam AMP-binding enzyme domain PF00501
          Length = 447

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 322 PLTSMDVERALSFAPRRGTAAF-KSSGGCSLSWFGCW 429
           P  S+DV   +S  P+RGT AF  +S G  L++   W
Sbjct: 34  PNPSLDVTTFISSQPQRGTTAFIDASTGHRLTFSDLW 70


>At3g21440.1 68416.m02705 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 193

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 253 LTDHFTTASNGSDSSSRGTEYSTTCRTARK 164
           +TDH++    GSDS     E   T R+A K
Sbjct: 108 MTDHYSVLHGGSDSEQENNEGIETPRSAPK 137


>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
           strong similarity to dynamin-like protein 6 (ADL6)
           [Arabidopsis thaliana] GI:6651399; contains Pfam
           profiles PF01031: Dynamin central region, PF00350:
           Dynamin family, PF02212: Dynamin GTPase effector domain,
           PF00169: PH domain; identical to cDNA dynamin-like
           protein ADL3,  GI:4803835
          Length = 920

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 229 SNGSDSSSRGTEYSTTCRTARKAYSKARMA 140
           SNG DS   G  +  TCR   K   KA  A
Sbjct: 651 SNGPDSKGPGLVFKITCRVPYKTVLKAHNA 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,038
Number of Sequences: 28952
Number of extensions: 186442
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)