Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h21
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12320.1 68417.m01950 cytochrome P450, putative Similar to P4...    28   4.3  
At5g23880.1 68418.m02805 cleavage and polyadenylation specificit...    27   5.7  
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote...    27   9.9  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    27   9.9  

>At4g12320.1 68417.m01950 cytochrome P450, putative Similar to P450
           monooxygenase (gi:14334057) [Gossypium arboreum]
          Length = 446

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
 Frame = +2

Query: 80  KML*KPQLLTPSS----DIVGADNRVIEVK*ISRKPFTSAVLEQ 199
           +++ KP+L+  +     ++VG DN +IE   I+R PF SA++++
Sbjct: 259 ELIRKPELMKRAQQELDEVVGKDN-IIEESHITRLPFISAIMKE 301


>At5g23880.1 68418.m02805 cleavage and polyadenylation specificity
           factor identical to cleavage and polyadenylation
           specificity factor [Arabidopsis thaliana]
           SWISS-PROT:Q9LKF9
          Length = 739

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 138 LSAPTMSDDGVNNCGFYNIFNQFFSLKYCADRD 40
           LSAP  + + V+  G   +++QF S K  +D D
Sbjct: 80  LSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFD 112


>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1173

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 386 VRTVGTE*TSLRISFDLGLLVNISNVTSTDSY--GSQPAFLKN 264
           V TVG    S  +  DLGLL N+ N+++ D+   G  P+ + N
Sbjct: 364 VLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISN 406


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +1

Query: 397 CRRSGCGPRSVIWR--PLLYNNEDYIKTNLNKFE 492
           C   G G    IWR   L+Y  ED + T L KF+
Sbjct: 453 CESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFK 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,060,868
Number of Sequences: 28952
Number of extensions: 188176
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)