Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h20
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 30 0.35
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 29 0.81
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 28 1.4
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.5
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 27 2.5
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 3.3
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 4.3
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 5.7
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 7.6
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 10.0
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 10.0
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.9 bits (64), Expect = 0.35
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 238 YMILVSLTNLIQNEITVTVHFAIKVINTTKDWFV 137
++I S I+ EI V+ H A ++NTT WFV
Sbjct: 15 FIISFSYAFSIKQEIIVSSHNASSILNTTAFWFV 48
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 296 LLVALLGVSMSACAFASQPV 355
L VALLG+S+ C FAS P+
Sbjct: 132 LTVALLGMSLYVCGFASGPI 151
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 218 QRHENHVDTINAVGENSHAAQIKMRALLVA-LLGVSMSACAFASQPVELELDDDDVTQKL 394
+R N D I ++ + + I+ RA L+ + AFA P+E+E ++DV L
Sbjct: 98 RRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDL 157
Query: 395 SNVSFARRITK 427
+ F + +K
Sbjct: 158 HFICFVKGKSK 168
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -1
Query: 525 DCFDITAISKSKDVTAVRNALDFPFPITSRIVGFV 421
D D TAI KS +V N LD P P+T+ I FV
Sbjct: 448 DHTDFTAIVKSY-FESVDNPLDIPKPLTNTINKFV 481
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 653 FWLVQPNPAAPQPIARRSHLKQLXKRLPIEPVLQAIEHRDA 531
FWL + N P+ HL+QL L P +E DA
Sbjct: 57 FWLKEENSQHPKIKKAHRHLEQLKSLLESLPTNNELEETDA 97
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 75 IQFFDTDAVHRAVYLSIAPI---NTNQSFVVFITLIAK*TVTVIS 200
++FF A++++VY+SI P + + + + TL+A V VIS
Sbjct: 707 LEFFLNPAIYKSVYVSIQPSYYRSAGRLLMRYRTLLASFPVVVIS 751
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 176 KMNSDSNFILNQIRQRHEN 232
K NS+ ++LN IR RH+N
Sbjct: 162 KFNSNFAYLLNTIRTRHDN 180
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 445 YWKWKIQCISDGSDILAFTYRCDVEAIVVAS 537
YWK KI C S GS+I + D ++ +
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGA 147
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 466 CISDGSDILAFTYRCDVEAIVVASRCSMACSTGSI 570
C SD +L +Y + E + S C + C+ S+
Sbjct: 118 CFSDYKKVLGSSYASEEERQLALSECHLRCAERSL 152
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 289 HLDLSGMRILTDRVNGIYMILVSLTNLIQNEITV 188
HLD SG I + VNG ++ + + N+ TV
Sbjct: 365 HLDTSGFPITVEGVNGTGRFILFNLSSVANDSTV 398
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 289 HLDLSGMRILTDRVNGIYMILVSLTNLIQNEITV 188
HLD SG I + VNG ++ + + N+ TV
Sbjct: 285 HLDTSGFPITVEGVNGTGRFILFNLSSVANDSTV 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,633
Number of Sequences: 5004
Number of extensions: 48447
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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