Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h20
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           30   1.9  
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583...    29   2.6  
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702...    29   4.5  
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148...    28   7.8  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 374 DDVTQKLSNVSFARRITKPTIRLVIGNGKSSAFLTAVTSLLLLIAVMSKQSWW 532
           DDV +K++ + F+R   + T+R +  NG++      +  L+    V   Q  W
Sbjct: 525 DDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMNDSDVQQPQKGW 577


>03_02_0137 +
           5832608-5833590,5833680-5833731,5833827-5833904,
           5835228-5835347,5835618-5835716,5835821-5835975,
           5836117-5836257,5836395-5836503
          Length = 578

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 553 KPSSTATPPRLLRHHSDK*KQGCHCRQKC--TGFSISN 446
           + +  AT P+  + H    KQ C CRQ+C  TG  IS+
Sbjct: 521 RSAKPATVPKEPKFHPRPEKQSCLCRQRCMDTGMLISS 558


>01_01_0891 +
           7023383-7023700,7024627-7024705,7024888-7024951,
           7025324-7025401,7025513-7025708,7025895-7025963,
           7026115-7026254,7026425-7026547,7027390-7027582,
           7028872-7029034,7029433-7029476,7029683-7029724
          Length = 502

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 416 RITKPTIRLVIGNGKSSAFLTAVTSLLLLIAVMSKQSWWRRGARW 550
           R   P +R+V G+GK+  +LT    LL L+      +W RRG RW
Sbjct: 378 RTLVPRMRVVKGSGKAINYLTPPRILLALVT-----AWVRRG-RW 416


>01_01_0172 +
           1485170-1485176,1485480-1485511,1485622-1485870,
           1486350-1487813,1487906-1487959
          Length = 601

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 263 NSHAAQIKMRALLVALLGVSMSACAFASQPVELELDDDDVTQKLSNVSF 409
           + HA  +    LL  LLG  +        P++L  DDDD+   +++ SF
Sbjct: 215 HDHALGLTRANLLAGLLGAYVIEKPEVDTPMDLPCDDDDLHLVIADRSF 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,801
Number of Sequences: 37544
Number of extensions: 328914
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)