Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h20
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 30 1.5
SB_55051| Best HMM Match : RVT_1 (HMM E-Value=0.014) 28 6.0
SB_52360| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 6.0
SB_36676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23) 28 6.0
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36) 28 6.0
SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6) 28 6.0
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 28 6.0
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_3942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097) 28 7.9
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 564 LYW*SLXKLLQMRATRYWLRCCGVRLNQPK 653
+ W SL Q+ A RYW R GVR +QP+
Sbjct: 946 IQW-SLWMSKQLNAERYWTRVPGVRTHQPR 974
>SB_55051| Best HMM Match : RVT_1 (HMM E-Value=0.014)
Length = 372
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 38 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLM 96
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 97 FSAMLTDAFKDDE 109
>SB_52360| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 455
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 38 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLL 96
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 97 FSAMLTDAFKDDE 109
>SB_36676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 124 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLM 182
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 183 FSAMLTDAFKDDE 195
>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
Length = 855
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 438 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLM 496
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 497 FSAMLTDAFKDDE 509
>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
Length = 1092
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 675 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLL 733
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 734 FSAMLTDAFKDDE 746
>SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)
Length = 358
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 258 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLM 316
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 317 FSAMLTDAFKDDE 329
>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 854
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 579 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLM 637
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 638 FSAMLTDAFKDDE 650
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 158 IYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLVALLGVSMSACA 337
++ + +K S FI N +RQ H+ + ++ GE SH+ + +L ++ +
Sbjct: 580 LWKIMAKFGCPSKFI-NIVRQLHDGMLASVQDNGETSHSFPVSNGVKQGCVLAPTLFSLL 638
Query: 338 FASQPVELELDDD 376
F++ + DD+
Sbjct: 639 FSAMLTDAFKDDE 651
>SB_3942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 299 LVALLGVSMSACAFASQPVELELDDDDVTQKLSNVSFARRITKPTIRLVIGNG 457
L L S + C SQ LE DD + Q + +V+F PTI L G G
Sbjct: 26 LQVLSSTSAATCKAPSQGTTLEFDDHVILQ-IFDVTFCIADEAPTIPLEEGRG 77
>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
Length = 1623
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 173 SKMNSDSNFILNQIRQRHENHVDTINAVGE 262
S D F+L + RHE H+ I+A+ +
Sbjct: 1409 SAQEEDRKFLLEMLVSRHEKHLSQIDAIND 1438
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 477 VRNALDFPFPITSRIVGFVILLAKLTLLNFCVT 379
V + +D+P +T+ VGFVI L+ L ++ +T
Sbjct: 316 VTSGIDYPTKVTNYRVGFVIALSWLFMIAIIIT 348
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,048,077
Number of Sequences: 59808
Number of extensions: 382697
Number of successful extensions: 965
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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