Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h20
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13250.1 68417.m02060 short-chain dehydrogenase/reductase (SD...    29   2.1  
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ...    29   2.8  
At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /...    27   8.7  
At3g03510.1 68416.m00349 phototropic-responsive NPH3 family prot...    27   8.7  

>At4g13250.1 68417.m02060 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 496

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 416 RITKPTIRLVIGNGKSSAFLTAVTSLLLLIAVMSKQSWWRRGARW 550
           R   P +R+V G+GK+  +LT    LL ++      SW RRG RW
Sbjct: 392 RTLVPRMRVVKGSGKAVNYLTPPRILLAIVT-----SWLRRG-RW 430


>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 573

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 605 RSHLKQLXKRLPIEPVLQAIEHRDATTIASTSQ 507
           +SHLK L K+  + P++ AI   D +T+ + ++
Sbjct: 6   KSHLKSLEKKKMVAPIIDAILANDVSTLLALAE 38


>At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 277 SGMRILTDRVNGIYMILVSLTNLIQNEITVTVHFA 173
           +G+RI TD+  G Y+  ++  N++  ++ V + F+
Sbjct: 343 AGLRIKTDKGRGGYISNITFNNVLLEKVKVPIRFS 377


>At3g03510.1 68416.m00349 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 455

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 29/104 (27%), Positives = 44/104 (42%)
 Frame = +2

Query: 125 SAD*YKPILCRIYYLNSKMNSDSNFILNQIRQRHENHVDTINAVGENSHAAQIKMRALLV 304
           SAD    +LC  YYL    +  SN +LN+     E  V  + +  E   A  I    +L 
Sbjct: 23  SADNIVSVLCIAYYLEMSDDHSSNNLLNKAVTFLEQRV--LMSWSETVKALCICSDKILD 80

Query: 305 ALLGVSMSACAFASQPVELELDDDDVTQKLSNVSFARRITKPTI 436
            L  V +    F    +E  L+D  + Q L  ++   R+ +P I
Sbjct: 81  KLANVGLIE-VFLDSLIEKALNDTRLLQDL--ITLPLRLYEPLI 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,661
Number of Sequences: 28952
Number of extensions: 256151
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)