Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h19
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    29   0.81 
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   3.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   10.0 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   10.0 

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 570 DRRNIPDIDNSNLYQHHYQESHRWCTEIYQLEN*EDIRTEL*DHLK 433
           DR   PD +   L  H Y E      ++ ++E+   ++T++ D LK
Sbjct: 307 DRSRYPDFNARKLVYHAYVEQSAVINDLLEIEDASLLKTDISDELK 352


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 586 TICIYILGPAGNLALKREENLENHQ 660
           +IC +I    GN AL R+    NH+
Sbjct: 339 SICFFIYAAVGNRALTRKNGTSNHR 363


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 429 LPSNDLITRFECLPNFPTGIF 491
           LP ND   R+E + + PTG +
Sbjct: 692 LPFNDFRVRYEIMAHLPTGTY 712


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 354 PSCACPSDFNPSTPSMYDCRKYGHCLPSN 440
           PS A PS  + S+P++ + +    CLPS+
Sbjct: 79  PSIAPPSLSHASSPNLSNSQDEAECLPSD 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,992
Number of Sequences: 5004
Number of extensions: 52098
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)