Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h18
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 55 3e-09
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 41 7e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 38 7e-04
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 30 0.10
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 30 0.14
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 29 0.18
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 28 0.42
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 27 0.98
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 1.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 1.7
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 5.2
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 5.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 5.2
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 24 6.9
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 24 6.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 9.1
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 24 9.1
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 24 9.1
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 55.2 bits (127), Expect = 3e-09
Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 FAKDFLAGGISAAVSKTAVPPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVR 370
F DF+ GG+SAAVSKTA PIERVKLL+Q Q + + RYKGI + F R
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKR 80
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 212 FAKDFLAGGISAAVSKTAVPPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 364
FA + +GG + A S V ++ + L S + ++++ G+VD +
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVY 182
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 40.7 bits (91), Expect = 7e-05
Identities = 16/28 (57%), Positives = 25/28 (89%)
Frame = +2
Query: 227 LAGGISAAVSKTAVPPIERVKLLLQVQH 310
L+GG++A VS+TAV P+ER+K++ QVQ+
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN 52
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 37.5 bits (83), Expect = 7e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 218 KDFLAGGISAAVSKTAVPPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 373
K +AGG + V+K+ V P++RVK+L Q H S + A R+ G+ A I
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHI 69
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 30.3 bits (65), Expect = 0.10
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 227 LAGGISAAVSKTAVPPIERVKLLLQVQHVSKQIAADQRYKGIVD 358
++GG+S A++ + P++ VK LLQ + S I ++ KG +D
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLD 251
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.9 bits (64), Expect = 0.14
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 203 PVAFAKDFLAGGISAAVSKTAVPPIERVKLLLQVQ 307
PV + +++G IS + V P+E V++ LQ+Q
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ 143
Score = 27.1 bits (57), Expect = 0.98
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 209 AFAKDFLAGGISAAVSKTAV-PPIERVKLLLQVQ 307
+F KDFLA G+S V++ V P + VK+ LQ Q
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQ 48
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 29.5 bits (63), Expect = 0.18
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVPPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAF 364
FL+GG++A + T P E +K Q+Q ++K + + YK + AF
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAF 74
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 28.3 bits (60), Expect = 0.42
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 161 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVPPIERVKLLLQ 301
V +T +N SN P + F+AGG++ + A P++ VK LQ
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 27.1 bits (57), Expect = 0.98
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 227 LAGGISAAVSKTAVPPIERVKLLLQVQHVS 316
LAGGIS+ + + + P + +K+ +Q+ S
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS 50
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 1.3
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVPPIERVKLLLQVQHVSK 319
+LAGG++ +V++ + P++ +K +Q +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 1.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 61 YEITPNLLFKNQELVFRDPPSACAATPTSTY 153
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 73 PNLLFKNQELVFRDPPSACAATPT 144
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 5.2
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 41 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 163
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 366 TKASTIPL*RWSAAICLLTCCTWSSSLTRSM 274
T+ + + + WSA I +LT C SLT S+
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSL 563
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 6.9
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = +2
Query: 122 PRVPQLPPRHIHLVKIT*SNKMSNLADPVAFAKDFLAGG-----ISAAVSKTAVPPI-ER 283
P PQ P ++I ++ +PV FA L S + P
Sbjct: 96 PTTPQTPKTPKRTIQIVTPKSLNRTCNPVPFATRLLQSTPHRQLFPPTPSTPSTPSYNST 155
Query: 284 VKLLLQVQHVSKQIAADQRYKGIVDAFVR 370
KL L+ + S + + K IV++F R
Sbjct: 156 AKLSLRKSYRSAGVVGRENEKSIVESFFR 184
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 91 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 210
N EL PS+ AATPT + S +I + RSG+
Sbjct: 75 NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 115 PPSACAATPTSTYSPSED 168
PPSA + P+S+ SPS D
Sbjct: 374 PPSATSFQPSSSRSPSVD 391
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 118 PSACAATPTSTYSPSEDHIIEQNVEPRRSG 207
P A++P YSPS Q P RSG
Sbjct: 126 PDYYASSPYGGYSPSGASSARQTPAPSRSG 155
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 23.8 bits (49), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = -3
Query: 373 DADEGVDDTLVTL----VGGDLLADVL 305
D DEGVDD V +GG++ ADV+
Sbjct: 921 DDDEGVDDFAVEYGGPDLGGEISADVV 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,721
Number of Sequences: 5004
Number of extensions: 26614
Number of successful extensions: 94
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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