Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h18
(378 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 48 3e-06
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 8e-06
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.025
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 34 0.044
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.077
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.18
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.23
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.23
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 29 0.95
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 29 0.95
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 29 1.7
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11) 28 2.9
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 28 2.9
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 2.9
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 3.8
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 3.8
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 5.1
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 27 5.1
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30) 27 6.7
SB_22110| Best HMM Match : DUF635 (HMM E-Value=0.65) 27 6.7
SB_37972| Best HMM Match : DUF635 (HMM E-Value=0.65) 27 6.7
SB_36934| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 27 6.7
SB_36218| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 27 6.7
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 26 8.8
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94) 26 8.8
SB_36658| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 26 8.8
SB_21048| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 26 8.8
SB_55349| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_44945| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 26 8.8
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 26 8.8
SB_29196| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18) 26 8.8
SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17) 26 8.8
SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22) 26 8.8
SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 26 8.8
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 48.0 bits (109), Expect = 3e-06
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 185 MSNLADPVAFAKDFLAGGISAAVSKTAVPPIERVKLLLQVQ-HVSKQIAADQRYKGIVDA 361
MS + F ++F G +A +SKTA PIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 362 FVR 370
+R
Sbjct: 61 TMR 63
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 47.6 bits (108), Expect = 3e-06
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +2
Query: 218 KDFLAGGISAAVSKTAVPPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 373
K LAGGI+ AVS+T+V P+ERVK+LLQ+Q + ++KG++ ++I
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQI 81
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 46.4 bits (105), Expect = 8e-06
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 212 FAKDFLAGGISAAVSKTAVPPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVR 370
F ++F G +A +SKTA PIERVKLL+Q Q + K D YKG++D R
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSR 62
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 34.7 bits (76), Expect = 0.025
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 233 GGISAAVSKTAVPPIERVKLLLQVQ 307
GG A VS+TA P++R+K+LLQVQ
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ 167
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 33.9 bits (74), Expect = 0.044
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -1
Query: 282 RSMGGTAVLETAAEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 112
+ + G V + A++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 526 KKLRGKPVEQHMADLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 33.1 bits (72), Expect = 0.077
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 282 RSMGGTAVLETAAEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 112
+ + G V + A++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1253 KKLRGKPVEQHMADLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +2
Query: 182 KMSNLADPVAFAKDFLAGGISAAVSKTAVPPIERVKLLLQVQ---HVSKQIAADQRYKGI 352
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 353 VDAF 364
D F
Sbjct: 79 KDCF 82
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 31.5 bits (68), Expect = 0.23
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 206 VAFAKDFLAGGISAAVSKTAVPPIERVKLLLQV 304
+ + + FL GG SA ++++ P+E VK+L QV
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV 88
Score = 30.7 bits (66), Expect = 0.41
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 227 LAGGISAAVSKTAVPPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 373
LAG S ++ V P E +K L VQHV+K ++ YKG+ A I
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNK---SNAHYKGMRHALKTI 202
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 31.5 bits (68), Expect = 0.23
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 200 DPVAFAKDFLAGGISAAVSKTAVPPIERVKLLLQVQHVSKQIAA 331
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMAS 53
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 29.5 bits (63), Expect = 0.95
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 272 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 373
P ERVK LLQVQ K+ RY+G+ D +++
Sbjct: 180 PTERVKCLLQVQ---KESGTKARYQGLGDCLLQV 210
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 236 GISAAVSKTAVPPIERVKLLLQVQH 310
G+S +KT P+ER+K+L Q Q+
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN 87
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 239 ISAAVSKTAVPPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRI 373
I A TAV PI+ VK +Q Q + A++ YK +D F ++
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRA--VLEAEKVYKNSIDCFFKV 964
>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
Length = 1170
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = -1
Query: 282 RSMGGTAVLETAAEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 112
+ + G + + A++PP R + + + FD+ + + +R RG T+ WG+
Sbjct: 1005 KKLRGRPLEQRMADLPPDRTEVCSPFTNVGFDVFGPWSVKSR-KTRGAIANTKRWGL 1060
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 230 AGGISAAVSKTAVPPIERVKLLLQ 301
AGG++ S+T P+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 19 ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 162
++ ++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 67 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 177
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 46 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 168
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = -1
Query: 282 RSMGGTAVLETAAEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 112
+ + G + + A++PP R + + + FD+ + + +R RG + WG+
Sbjct: 1642 KKLRGRPLEQRMADLPPGRNEVCSPFTNVGFDVFGPWSVKSR-KTRGSIANAKRWGL 1697
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 328 RRPALQGYRRRLRPHPQ 378
RRP LQ R+R+RP PQ
Sbjct: 429 RRPGLQRDRKRMRPGPQ 445
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 27.1 bits (57), Expect = 5.1
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 176 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVPPIERVKLLLQVQHVSKQIAADQRYKGIV 355
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 356 DAFVRI 373
D RI
Sbjct: 181 DCLRRI 186
>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
Length = 300
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 32 HTPTLCAPVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLVKIT 172
H C PV+ L K + ++ H RV PPR +H++ +T
Sbjct: 256 HVNACCNPVVYSLHNPKLRKCMN--RLVHHKRVRTSPPRAVHVLAMT 300
>SB_22110| Best HMM Match : DUF635 (HMM E-Value=0.65)
Length = 178
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLEAIKKLA 128
>SB_37972| Best HMM Match : DUF635 (HMM E-Value=0.65)
Length = 257
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLEAIKKLA 128
>SB_36934| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 328
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 20 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLEAIKKLA 58
>SB_36218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLEAIKKLA 128
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 254 SKTAVPPIERVKLLLQVQHVSKQIAADQRYKGI 352
S + VPP+ + + LQ+ +V+ Q A D+ +G+
Sbjct: 979 SSSFVPPLFKANVTLQIPNVTMQPALDEIQQGL 1011
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 20 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 58
>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
Length = 969
Score = 26.2 bits (55), Expect = 8.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 110 VIPHPRVPQLPPRHIHLVKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKT 262
V+PHP PQ P L ++ ++K+ PVA A + +A +T
Sbjct: 442 VVPHPSAPQQSP----LTGLSWADKVKGTPSPVASACKIVPSNTTAFTHRT 488
>SB_36658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 128
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 259 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 297
>SB_21048| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 369
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 128
>SB_55349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 128
>SB_44945| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 361
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTHKSTAEVLGAIKKLA 128
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVPPIERVKLLLQV 304
F+ GG++ AVS+T P++ V+ +Q+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQL 202
>SB_29196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 128
>SB_25658| Best HMM Match : FYRC (HMM E-Value=0.18)
Length = 211
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 91 NQELVFRDPPSACAATPTSTYSPSE 165
N+E +DPP AC P S+ SPSE
Sbjct: 67 NREPASQDPP-ACHDPPASSSSPSE 90
>SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1273
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 128
>SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22)
Length = 542
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 331 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 369
>SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 90 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 128
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 324 ICLLTCCT--WSSSLTRSMGGTAVLETAAEIPPARKSLA 214
I LL CC LTR+ GG+ ++ AE+ A K LA
Sbjct: 290 IQLLECCDEHLRKDLTRNAGGSLTNKSTAEVLGAIKKLA 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,456
Number of Sequences: 59808
Number of extensions: 222778
Number of successful extensions: 654
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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