Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h17
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   1.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    24   5.8  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 152 NLSHFYFTLLSFIVEVLYIKFLIQILYTFYHFHFNEVTLLMLI 24
           NLS+F  TLL   +    +   + I Y   +F  N + ++M+I
Sbjct: 359 NLSNFQLTLLGMGISSFALLGTVIIPYLTEYFQLNSLQVVMII 401


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 128  LLSFIVEVLYIKFLIQILYTFYHFHFNEVTL 36
            L+ + VE+   +    ILYT YH   N++ +
Sbjct: 1548 LMKYFVEIGNYECFAAILYTCYHLLRNDLVM 1578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,706
Number of Sequences: 5004
Number of extensions: 18316
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)