Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h17
         (305 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)          25   9.2  

>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 173 HNGEEFSGCKETINDNDKP 229
           H+   F+GC +T+ D+ KP
Sbjct: 73  HHQRSFTGCMQTLTDSQKP 91


>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
          Length = 466

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 202 FTAAELFAI--VLDDLDFSICPISISRCLVSLL 110
           +T   L+ I   L+   F++C +S++RC  S+L
Sbjct: 79  YTLLLLYGIHYTLNSQVFAVCVVSVARCFASML 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,971,719
Number of Sequences: 59808
Number of extensions: 124450
Number of successful extensions: 275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)