Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h17
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    31   0.21 
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    30   0.37 
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 158 FFNLSHFYFTLLSFIVEVLYIKFLIQILYTFYHF 57
           FF   +FYF + +F +   Y   LI ++YTF HF
Sbjct: 230 FFLAKNFYFQIFNFFIANQY---LITLIYTFSHF 260


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 158 FFNLSHFYFTLLSFIVEVLYIKFLIQILYTFYHFHFN 48
           FF     Y++ L ++ EVLYI   + ++++F  F  N
Sbjct: 30  FFEDDDDYYSWLDYVHEVLYILSRVYVVFSFIQFFIN 66


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 206  FLYSR*TLRHCVR*S*FFNLSHFYFTLLSFIVEVLYIKFLIQILYTFYHFHFNEVTLLML 27
            F + + T  +CV     F  S F+F  L F+       F  Q    F+HF    + LL +
Sbjct: 1012 FFFIKDTYSNCV-----FRESIFFFYKLYFVFISFCATFQEQRSVNFFHFEIVTLILLTM 1066

Query: 26   I*RLFI 9
               LF+
Sbjct: 1067 SENLFV 1072


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,114,102
Number of Sequences: 27780
Number of extensions: 100689
Number of successful extensions: 280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)