Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h17
         (305 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    28   1.1  
At4g12840.1 68417.m02012 expressed protein contains Pfam profile...    28   1.4  
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea...    27   1.9  
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea...    27   1.9  
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to...    25   7.6  
At3g13350.1 68416.m01680 high mobility group (HMG1/2) family pro...    25   7.6  
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ...    25   7.6  

>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 125 LSFIVEVLYIKFLIQI--LYTFYHFHFNEV 42
           + F+VEVLY+ F+ QI  L T Y   F E+
Sbjct: 163 VDFMVEVLYLSFVFQIQELVTLYERQFLEI 192


>At4g12840.1 68417.m02012 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 413

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 143 HFYFTLLSFIVEVLYIKFLIQILYT-FYHFHFNEVTLLML 27
           + + TLL  +  V Y + L Q++ T FY    + +T+LML
Sbjct: 172 NMFVTLLGGLQSVFYTRILSQLILTFFYGMKISVLTILML 211


>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1309

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 96  NVQHLNNETKQREIEMGQIEKSRSS 170
           N+Q +NN+ +  E+E+ +I ++RS+
Sbjct: 740 NIQDVNNDPRDTEVEVKEISEARST 764


>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1344

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 96  NVQHLNNETKQREIEMGQIEKSRSS 170
           N+Q +NN+ +  E+E+ +I ++RS+
Sbjct: 775 NIQDVNNDPRDTEVEVKEISEARST 799


>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
          Length = 639

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -2

Query: 277 CILGSERSSGLPWTXXXXXXXXXGFFTAAELFAIVLDDLDFSICPISISRCLVSLLRCCT 98
           C   +E  +G  W          GF    + + I  DD+   +CPI     +  L R CT
Sbjct: 504 CNETTEEYAGSSWDELKHIRQAVGFMVIHKKYRISYDDIAHDLCPI---LSVQQLYRICT 560

Query: 97  L 95
           L
Sbjct: 561 L 561


>At3g13350.1 68416.m01680 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to Dead Ringer Protein Chain A
           Dna-Binding Domain (GI:6573608), Arid-Dna Complex
           (GI:20150982) from [Drosophila melanogaster]; contains
           Pfam profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 319

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 131 TLLSFIVEVLYIKFLIQILYTFY 63
           T  SF++   Y+KFL Q+ + +Y
Sbjct: 109 TSASFVLRKYYLKFLFQLEHVYY 131


>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
           PF03005: Arabidopsis proteins of unknown function
          Length = 451

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 149 LSHFYFTLLSFIVEVLYI 96
           L+HF+FT+L+FI+   +I
Sbjct: 16  LTHFFFTVLAFILLAAFI 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,677,035
Number of Sequences: 28952
Number of extensions: 89513
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)