Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h15
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    30   0.24 
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   1.7  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   5.1  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   5.1  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   8.9  

>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 504 SCRIMW-HLYFTQTCRMLRHFFFRLRSYCDNW 412
           SC+  W ++YF +   M +H   R+  YCD +
Sbjct: 243 SCKFPWTYIYFVECLGMEKHLIDRVGKYCDTF 274


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 86  YSNISTSPLSCVCYVNFKL 142
           + N STSP+S V YVN KL
Sbjct: 101 FENASTSPVSDVTYVNTKL 119


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 412 PVITVRTQPKKKVSQHAARLRKIEMPHNPT 501
           P  TVR+  K+  S H++++ K  +P +PT
Sbjct: 252 PQKTVRSIVKQTSSPHSSKMPKHSLPSSPT 281


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  FISVPPFLYLIIKSFVYSNI 97
           +I++PP +Y+ + S +Y N+
Sbjct: 113 YIALPPSVYVTVSSHIYENL 132


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -1

Query: 324 IDFVLQIITTCFRQRKLIIY 265
           ID V++ +T+C++ +KL+++
Sbjct: 441 IDNVVKFLTSCYKLKKLVLH 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,132
Number of Sequences: 5004
Number of extensions: 29727
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)