Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h15
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54300.1 68418.m06763 expressed protein contains similarity t...    29   1.4  
At3g01880.1 68416.m00133 hypothetical protein                          27   9.9  
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    27   9.9  

>At5g54300.1 68418.m06763 expressed protein contains similarity to
           cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 326

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 38  FISVPPFLYLIIKSFVYSNISTSPLS 115
           F+  PP+LYL+I S +   I+TS L+
Sbjct: 52  FLLKPPYLYLVINSIIVCIIATSKLT 77


>At3g01880.1 68416.m00133 hypothetical protein
          Length = 592

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 56  FLYLIIKSFVYSNISTSPLSCVCYVN 133
           F++L +K   ++   T+PL+ + YVN
Sbjct: 15  FVFLFVKQLSWAETGTNPLTNISYVN 40


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 301 HNVLPPAQIDHLLPVSKLLCP 239
           HN LPP    HLLP+S  L P
Sbjct: 75  HNSLPPPPPPHLLPLSPPLPP 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,373,286
Number of Sequences: 28952
Number of extensions: 152277
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)