Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h14
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    23   3.0  
EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic hor...    21   6.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.9  

>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 588 LLLVCFAGICRLYFNVKCNW 647
           ++L+ F G+C    N   +W
Sbjct: 8   VVLIAFVGVCTAQLNFSTDW 27


>EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic
           hormone 2 protein.
          Length = 68

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 588 LLLVCFAGICRLYFNVKCNW 647
           +LL+   G+C    N   NW
Sbjct: 8   VLLITIVGLCAAQLNFTPNW 27


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 58  YVPFYKQTYR 29
           YVPFY+  YR
Sbjct: 252 YVPFYRYCYR 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,596
Number of Sequences: 336
Number of extensions: 3090
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)