Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h14
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16566.1 68417.m02507 histidine triad family protein / HIT fa...    94   7e-20
At3g56490.1 68416.m06282 zinc-binding protein, putative / protei...    49   3e-06
At1g31160.1 68414.m03812 zinc-binding protein, putative / protei...    49   3e-06
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr...    38   0.006
At5g48545.1 68418.m06002 histidine triad family protein / HIT fa...    37   0.014
At1g10880.1 68414.m01250 expressed protein contains Pfam profile...    27   8.6  

>At4g16566.1 68417.m02507 histidine triad family protein / HIT
           family protein contains Pfam domain, PF01230: HIT family
           (histidine triad protein family)
          Length = 146

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 48/103 (46%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
 Frame = +1

Query: 241 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKE--LL 414
           CIFC I      T +L+ D++V  F+DIKPA++ H L IPK HI  V  L   D++  L+
Sbjct: 8   CIFCEIVRNPTTTRLLHTDEKVIAFQDIKPAAQRHYLVIPKEHIPTVNDLQRRDEDYSLV 67

Query: 415 NRMMSISRELLSKN-NLSIEDARFGYHWPPFRSVKHLHLHTIA 540
             M+S+ ++LL K+   SI   RFG+H PPF SV HLHLH  A
Sbjct: 68  RHMLSVGQQLLQKDAPQSIH--RFGFHQPPFNSVDHLHLHCFA 108


>At3g56490.1 68416.m06282 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 147

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
 Frame = +1

Query: 244 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK---ELL 414
           IF  I +K   + +++EDD+V  FRDI P    HIL IPK   + +  L+ A++   ++L
Sbjct: 37  IFDKIISKEIPSTVVFEDDKVLAFRDITPQGPVHILLIPKVR-DGLTGLSKAEERHIDIL 95

Query: 415 NRMMSISRELLSKNNLSIEDARFGYHWPP--FRSVKHLHLHTI 537
            R++  + +L++K     E  R   +  P   +SV H+H+H I
Sbjct: 96  GRLL-YTAKLVAKQEGLAEGFRIVINDGPQGCQSVYHIHVHLI 137


>At1g31160.1 68414.m03812 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 187

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
 Frame = +1

Query: 244 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK---ELL 414
           IF  I  K   ++I+YED+ V  FRDI P +  H+L IPK   + + SL  A+    E+L
Sbjct: 77  IFDKIIAKEIPSDIVYEDENVLAFRDINPQAPVHVLVIPKLR-DGLTSLGKAEPRHVEVL 135

Query: 415 NRMMSISRELLSKNNLSIEDAR--FGYHWPPFRSVKHLHLHTI 537
            +++  S+ +  K  + ++  R          +SV HLHLH +
Sbjct: 136 GQLLHASKIVAEKEGI-LDGFRVVINNGVEACQSVYHLHLHVL 177


>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain, weak hit to PF01661: Appr-1-p
           processing enzyme family
          Length = 912

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
 Frame = +1

Query: 298 DEVCVFRDIKPASRFHILTIPKRH-IEDVKSLTSADKELLNRMMSISRELLSKNNLSIED 474
           D + V  D  P +R H+L + ++  ++ ++ +   + +LL  M ++  + + +     ED
Sbjct: 739 DNIVVINDQYPKARKHVLVLARQESLDGLEDVRKENLQLLQEMHNVGLKWVDR--FQNED 796

Query: 475 A----RFGYHWPPFRSVKHLHLHTIAPE 546
           A    R GYH  P  S++ LHLH I+ +
Sbjct: 797 ASLIFRLGYHSVP--SMRQLHLHVISQD 822


>At5g48545.1 68418.m06002 histidine triad family protein / HIT
           family protein contains Pfam profile PF01230:HIT domain;
           contains Prosite motif PS00892: HIT family signature.
          Length = 197

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
 Frame = +1

Query: 241 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSL-TSADKELLN 417
           C+FC I         LYEDD      D  P S  H L IPK H   ++    S    + +
Sbjct: 50  CVFCKIIRGESPCLKLYEDDMCLCILDTNPLSHGHSLIIPKLHYPTLEETPPSVVAAMCS 109

Query: 418 RMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIAPESE 552
           ++  IS  ++        +          + + H H+H I P  E
Sbjct: 110 KVPLISNAIVKATGSDSFNLLVNNGAAAGQVIFHTHIH-IIPRKE 153


>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 651

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 403 KELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHL-HLHTIAPESEMGFIGRVIF 579
           KE+  +M+ I +E+  K  +S  +    + W P    + + +  +  PE  +  + ++ F
Sbjct: 399 KEMQQQMLQIDKEIREKTYISGLEYNLNHRWRPIEDYQPIVYFRSKCPEKMV--LDKLTF 456

Query: 580 KKNSY 594
             N+Y
Sbjct: 457 ANNAY 461


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,929
Number of Sequences: 28952
Number of extensions: 256176
Number of successful extensions: 535
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)