Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10h13
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09) 29 4.1
SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51) 28 5.4
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 28 5.4
SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12) 28 7.1
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_47829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
>SB_5480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 176 YAESRTSDACPPIRNVTHPLRYYEFTQDEIKALEECDKESFYQRC 310
YA S T C +RN++ Y+ +DEI L DK + C
Sbjct: 69 YASSETKIYCYDLRNLSSSTLEYDVNEDEINQLAVHDKGRYLAAC 113
>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 286 QGELLSTLSPVQCAVRFSNIRCRQIWT 366
Q L S S C VRF+ R R++WT
Sbjct: 280 QNLLTSAASYASCLVRFTEARVRRVWT 306
>SB_45121| Best HMM Match : rve (HMM E-Value=3.8e-09)
Length = 1111
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 13 INHFRTK*KQNYCNALFLNKKGKKSVLSFHYDDY 114
+NHF C AL NKKGKK + + Y+ Y
Sbjct: 120 LNHFSVA-----CKALKANKKGKKPIHNLDYESY 148
>SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 301 STLSPVQCAVRFSNIRCRQIWTSETKPKIWSIPK 402
STLSP+QC V N +W E P I I K
Sbjct: 221 STLSPIQCNVDTKN--AEGVWAKECAPVISPISK 252
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Frame = +3
Query: 192 PATHVLPSET--SHTHCATTNSHKTKLKPLKN-----VTRRASINAVSRSVRCSLL*HTL 350
P T V+ S T H C SH + VTR S + +SR V C+L HTL
Sbjct: 990 PVTRVISSHTLSRHVTCTLFQSHPVTRTLSSHTLSRPVTRTLSSHTLSRHVTCTLSSHTL 1049
>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 179 AESRTSDACPPIRNVTHPLRYYEFTQDEIKALEECD 286
AE S RN +PL +Y+ T DEI L++CD
Sbjct: 136 AEIANSHILDQYRNPGNPLAHYDSTADEI--LQQCD 169
>SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)
Length = 1275
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 609 PASEYISLVVAPYIEGVCTGIEVPPIFPFFRSLSICPI*LPGNAISFSAHAC 454
P S S P C G++ PP+ +S+ P+ N I FS AC
Sbjct: 449 PLSFATSCRTPPSSLNSCLGLDQPPLSRLRTCISVFPLRSDWNRIRFSLSAC 500
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 437 GKLSYQQACAEKLMALPGSY----IGQILRDRKNGKIGGTSMPVQTPSMYGATTNDIYSD 604
GK S + C+ PG GQI+RD+ ++ G S T S YGA +
Sbjct: 1577 GKSSGTKTCSRYRANHPGQTHAAGTGQIIRDKHMQQVRGKSSGTNTCSRYGANHSGQTHA 1636
Query: 605 AGPG 616
+G G
Sbjct: 1637 SGTG 1640
>SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)
Length = 849
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = +2
Query: 11 QSTILEQNKSKIIVMHYF*TKKERSPSYLSITMIM*FRDAM-VGKSKDVKEEDCDCYAES 187
QS IL+ K+ + + +KKER PS SIT F + ++ E + +
Sbjct: 171 QSKILDLEARKVRLHKGYLSKKERRPSISSITTKESFASVLDTHPGREADTEFMHRFIDE 230
Query: 188 RTSDACPPIRNVTHPLRYYEFTQDEIKALEECDKESFYQRC 310
PP + + R T + + E C +++ + C
Sbjct: 231 VVISEAPPTSSDSALDRLLSITSQNM-SFEACKLKAYVREC 270
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 174 VTRSLAPATHVLPSETSHTHCATT 245
VTRS+A +TH+ PS S T A++
Sbjct: 1832 VTRSVASSTHLTPSVASSTQAASS 1855
>SB_47829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 380 PRFGPFPKVTLAVVVGYFLGKL 445
PR PFPK LA+ +G F GK+
Sbjct: 49 PRLVPFPKRWLALTLGQFGGKI 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,693,726
Number of Sequences: 59808
Number of extensions: 441241
Number of successful extensions: 1245
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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