Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h13
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r...    31   0.83 
At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p...    29   1.9  
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    28   5.8  
At3g56300.1 68416.m06258 tRNA synthetase class I (C) family prot...    27   7.7  

>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = +3

Query: 237 ATTNSHKTKLKPLKNVTRRASINAVSRSVRCSLL*HTLPSNMDI*NQTQDLVHSQR 404
           + TN+H+  +K LKN+  + S++  +   R S L  TL + ++I    +DLVH+++
Sbjct: 749 SNTNNHEEAIKDLKNMPTKDSLSEDATRYR-SALDMTLKALLNIKVLQEDLVHNRQ 803


>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 240

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 120 SGTLWLEKVKM*RRKIVIVTRS--LAPATHVLPSETSHTHCATTNSHKTKLK 269
           + T+W   VK+ R K ++ T S  L P  HV+P ET+ +      S+  + K
Sbjct: 164 TNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTK 215


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 368 LKPNPRFGPFPKVTLAVVVGYFLGKLSY 451
           +KPN +FGPFP+  +AV +   L  L Y
Sbjct: 108 IKPN-KFGPFPESLVAVYIAQVLEGLVY 134


>At3g56300.1 68416.m06258 tRNA synthetase class I (C) family protein
           similar to cysteinyl-tRNA synthetase [Methanococcus
           maripaludis] GI:6599476; contains Pfam profile PF01406:
           tRNA synthetases class I (C)
          Length = 489

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/88 (19%), Positives = 42/88 (47%)
 Frame = +2

Query: 32  NKSKIIVMHYF*TKKERSPSYLSITMIM*FRDAMVGKSKDVKEEDCDCYAESRTSDACPP 211
           N   + + H+  + + RSP   S++ +    DA+   S   +E   D     ++++A   
Sbjct: 275 NYHPLALRHFLMSAQYRSPLNYSVSQLESSSDALYSLSPYREEMSGDVGKTQQSAEAKEM 334

Query: 212 IRNVTHPLRYYEFTQDEIKALEECDKES 295
           I+ V + L++   +  ++K +++  + S
Sbjct: 335 IKKVKNALKFINVSISKLKKMQKKQRMS 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,465,095
Number of Sequences: 28952
Number of extensions: 312914
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)