Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10h12
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358...    29   3.5  
11_06_0179 + 20952070-20955228                                         29   4.6  

>12_01_0456 +
           3587244-3587440,3587595-3587766,3587877-3587999,
           3588165-3588338,3588537-3588647,3588737-3588870,
           3588945-3589038,3589122-3589220,3590494-3590630,
           3590709-3590803,3590922-3591045,3591122-3591209,
           3592867-3593043,3593130-3593167,3593398-3593485,
           3594101-3594209,3594374-3594443,3594520-3594667,
           3595069-3595197,3595292-3595417,3595596-3595658,
           3595952-3596197
          Length = 913

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 171 RPMRRKMVLKHRRMKAFFNNHNPTDYITKGVRKMIGRIYSVSDRVR 308
           R +  K+ +     K  F++H P+DY T    K++G + S  D  R
Sbjct: 668 RHLNFKLAMSVLASKIDFSDHEPSDYYTNITSKILGDMLSPHDMKR 713


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 116 PHCVMCVLYSSVIVFRSFCCLNLRFGFYIFH 24
           PHC M   Y +  +  + CC+N R  F+ ++
Sbjct: 167 PHCQMRYQYYNNAINTTVCCMNCRRNFFAYN 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,365,891
Number of Sequences: 37544
Number of extensions: 289221
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)